Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1609 ATGGCGAAGCATTCCGTGGCAATGGCGAAGAAGCGGTGGCCGATAATTTTGGCAGCATTTTTGTCCGTGTCGACTGTGACAGTGCTCTTAATGAGAGCTACCAACTCCGATTCCTGCAACGTTAGTAGTTTTAATCTTGCACAGGATAAACAGATTCGTTCATCCGTCCAAGTCGGAAATGCAGCTTCGAGTCCTCTAAATTTCATGAAGTCGAAGCTAGTTCTCATGGTATCACATGAGCTATCTCTTTCAGGCGGGCCTTTATTGATGATGGAGTTGGCGTTTCTGTTGAGAGGCGTTGGTTCTGAAGTTGTTTGGATCACCAACCGTAAACCGGCGGAACCTGATGAGGTCGTTTACAGTTTGGAAAATAAATTGTTGGACAGAGGAGTGCAGGTCTTCTCTGCCAAAGGTGAAAAGGCTATAGATACAGCTCTTAAAGCAGATATAGTCATTCTAAACACGGCTGTAGCTGGGAAGTGGCTGGATGCCGTTCTCAGGGAAAAAGTTGCACGTGTGCTTCCAAAGGTTTTATGGTGGATTCATGAAATGCGAGGGCATTATTTCGACATGGAATATGTTAAGCACCTCCCTTTTGTTGCAGGTGCCATGATTGATTCACATACAACTGCAGAATACTGGAAGAATAGGACTAAGGAGGGTTTAAAGCTTAACATGCCTGAAACCTTTGTTGTACATCTTGGAAATAGCAAGGAGCTTATGGAAGTTGCAGAAGATAGTGTAGCAAAGAGGGTTCTACGTGAGCATGTTCGTGAATCTCTTGGAGTGAGAAATGATGATCTACTTTTTGCCATCATAAATAGTGTTTCTCGTGGTAAAGGGCAGGATCTATTTCTTAAAGCCTTTTATGAAAGTTTGCAACTCATCCAGGAGAAGAAACTCCAGTTGCCATCTTTGCATGCTGTAGTAGTGGGGAGTGATTTTAGTGCTCAGACAAAGTATGAAATGCAACTGCGCAAATTTGTTATTGAGAACAAGATTCAGGACCGTGTTCACTTTGTGAACAAAACCTTGGCTGTGGCTCCTTACCTGGCTTCTATTGATGTTCTTGTTCAGAATTCTCAGGGACGGGGAGAATGTTTTGGAAGGATAACCATTGAAGCAATGGCATTTCGCCTGCCTGTACTGGGAACTGCAGCTGGAGGCACGATGGAGATTGTGGTGAATGGGACAACCGGTTTGCTGCATCCTGCTGGAAAAGACGGCGTGACACCTCTGGCAAAGAACATTGTGAAATTGGCAACTCATGTTGAGAAGAGGCTGACCATGGGAAAGAAAGGATATGAGAGGGTGAAAGAGAGGTTTATGGAGCACCATATGTCACAGAGAATTGCATTGGTTCTGAAGGAAGTTTTACGGAAGTCTAGGCAATAG 1395 0.443 MAKHSVAMAKKRWPIILAAFLSVSTVTVLLMRATNSDSCNVSSFNLAQDKQIRSSVQVGNAASSPLNFMKSKLVLMVSHELSLSGGPLLMMELAFLLRGVGSEVVWITNRKPAEPDEVVYSLENKLLDRGVQVFSAKGEKAIDTALKADIVILNTAVAGKWLDAVLREKVARVLPKVLWWIHEMRGHYFDMEYVKHLPFVAGAMIDSHTTAEYWKNRTKEGLKLNMPETFVVHLGNSKELMEVAEDSVAKRVLREHVRESLGVRNDDLLFAIINSVSRGKGQDLFLKAFYESLQLIQEKKLQLPSLHAVVVGSDFSAQTKYEMQLRKFVIENKIQDRVHFVNKTLAVAPYLASIDVLVQNSQGRGECFGRITIEAMAFRLPVLGTAAGGTMEIVVNGTTGLLHPAGKDGVTPLAKNIVKLATHVEKRLTMGKKGYERVKERFMEHHMSQRIALVLKEVLRKSRQ* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1609 464 PANTHER GLYCOSYLTRANSFERASE 1 463 - -
Vra5g1609 464 Pfam Glycosyl-transferase family 4 70 249 IPR041693 -
Vra5g1609 464 PANTHER UDP-GLYCOSYLTRANSFERASE SUPERFAMILY PROTEIN 1 463 - -
Vra5g1609 464 CDD GT4_PimA-like 74 456 - -
Vra5g1609 464 Pfam Glycosyl transferases group 1 257 437 IPR001296 GO:0016757
Vra5g1609 464 Gene3D Glycogen Phosphorylase B; 244 442 - -
Vra5g1609 464 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 69 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1609 Vra-Chr5 22524755 22530108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1609 1 463 Glycosyltransferase AT1G19710 72.979 0.0 654
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1609 - - gmx:100791337 811.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1609 5 22524755 22530108 Vra5g1609 5 22524755 22530108 ECH