Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1608 ATGGCCGACGCAGAGGATGCCCTACGACGCCGTAATGCGGTTGCGGAGTATAGAAAGAAACTTCTTCAGCACAAGGAACTGGAATCCAGAGTCCGATCCGTGAGGGAAAATTTGCGTGCTTCAAAGAAAGAGTTCAATAAAACAGAAGATGATTTGAAGTCTCTTCAAAGTGTTGGGCAGATCATTGGCGAAGTTCTCAGGCCTCTTGACAATGAACGATTGATTGTTAAAGCAAGCAGCGGTCCCAGGTATGTGGTTGGCTGCCGCAGTAAAGTTGATAAGGAAAAATTGACTTCTGGAACAAGGGTGGTTCTGGATATGACAACACTCACCATAATGAGAGCACTTCCTCGTGAAGTTGATCCAGTTGTGTACAATATGCTGCATGAAGATCCTGGTAATGTCAGCTACTCAGCCGTTGGTGGTTTGTCTGATCAGATAAGGGAATTGAGGGAGTCTATCGAACTACCTCTGATGAATCCTGAGCTCTTTCTACGAGTTGGAATTAAACCACCAAAGGGTGTTCTGCTTTATGGGCCTCCTGGTACTGGTAAAACATTGTTAGCGAGGGCAATTGCTAGTAATATTGATGCTAACTTCCTAAAGGTTGTTTCCAGTGCCATAATTGATAAGTACATTGGAGAGAGTGCCAGGTTAATCAGGGAGATGTTTGGCTATGCACGTGATCATCAGCCCTGCATCATTTTTATGGATGAGATCGATGCCATTGGTGGTCGTCGATTCAGTGAGGGAACAAGTGCTGATCGTGAGATTCAGAGAACACTAATGGAGCTGCTTAATCAACTTGATGGATTTGATCAACTTGGAAAGGTTAAAATGATAATGGCTACAAACCGACCTGATGTACTTGACCCTGCTCTCCTCCGTCCCGGTAGATTGGATAGAAAAATAGAAATCCCTCTGCCTAATGAGCAATCAAGAATGGAAATTCTCAAGATTCATGCTGCTGGAATCGCCAAGCATGGTGAAATAGACTACGAAGCTGTTGTGAAGCTTGCAGAGGGATTTAATGGGGCTGATCTTCGAAATGTCTGCACAGAAGCTGGAATGTCAGCAATTCGTGCTGAGCGTGATTATGTGATCCATGAAGATTTTATGAAGGCTGTTAGGAAATTGAACGAGGCAAAGAAACTTGAATCCAGTGCACACTACAATGCGGATTTTGGTAAAGACTAG 1197 0.4403 MADAEDALRRRNAVAEYRKKLLQHKELESRVRSVRENLRASKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSAHYNADFGKD* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1608 398 SMART AAA_5 171 310 IPR003593 -
Vra5g1608 398 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 3 394 - -
Vra5g1608 398 Pfam AAA+ lid domain 331 373 IPR041569 -
Vra5g1608 398 PANTHER BNAC02G30020D PROTEIN 3 394 - -
Vra5g1608 398 Gene3D - 128 308 IPR027417 -
Vra5g1608 398 Pfam ATPase family associated with various cellular activities (AAA) 175 308 IPR003959 GO:0005524|GO:0016887
Vra5g1608 398 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 135 383 IPR027417 -
Vra5g1608 398 CDD AAA 141 308 - -
Vra5g1608 398 Pfam Proteasomal ATPase OB C-terminal domain 62 117 IPR032501 -
Vra5g1608 398 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 22 379 IPR005937 GO:0005737|GO:0030163|GO:0036402
Vra5g1608 398 Coils Coil 24 58 - -
Vra5g1608 398 ProSitePatterns AAA-protein family signature. 278 296 IPR003960 GO:0005524|GO:0016887
Vra5g1608 398 Gene3D - 309 379 - -
Vra5g1608 398 Gene3D - 23 127 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1608 Vra-Chr5 22518988 22523383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1608 134 378 Miscellaneous Gene Families AT3G47060 39.600 3.21e-53 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1608 K03064 - gmx:100788475 770.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1608 5 22518988 22523383 Vra5g1608 5 22518988 22523383 ECH