Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1604 ATGATATTGCAGTTTTTCGTTCTTTCCCAGAGAGGCGACAACATCGTCTACCGCGACTATCGTGGTGAAGCTCAAAAAGGAAGCGCCGAGACATTTTTCCGAAAAGTCAAGTTCTGGAAAGAGGATGTCGAGGGAGACGCTCCGCCTGTTTTTAATATAGATGGTGTGAATTACTTCCACGTGAAGGTTGCTGGATTGCTATTTGTTGCTACAACTAGGGTCAATGTCTCCCCTTCTCTTGTTTTGGAACTTTTGCAAAGAATTGCGCGTGTCATCAAAGATTATCTCGGTGTTCTTAATGAAGACTCCTTTCGAAAGAACTTTGTGCTCGTTTATGAATTGCTAGATGAAGTGATTGATTTTGGTTATGTGCAAACAACATCCACTGAGGTTTTGAAGTCTTACATTTTCAATGAGCCAATAGTTATTGATGCTGCACGGATGCCTCCCCTTGGTCCTGCTTCCATTTTTATGCAAGGGACCAAACGAATGCCAGGTACGGCTATTACAAAGTCTGTGGTTGCTAATGAACCTGGTGGTAGGAAGAGGGATGAGATATTTGTTGATGTAATTGAGAAAATAAGTGTTACATTCAATTCTAGTGGATTTATACTTACTAGTGAGATAGATGGAACCATACAAATGAAGAGTTATCTTTCTGGTAACCCAGAGATTCGACTTGCTCTTAACGAGGACCTGAGTATAGGGACAAGTGATTATAGAGGTTCAGCTGCTGTGATTTTAGATGATTGTAACTTCCATGAGTCTGTACACCTTGATAATTTTGAAGTTGATAGAACTTTGTCATTGGTACCACCAGATGGTGAGTTTCCAGTCATGAATTATCGTATGACTCAACCTTTTAAACCACCATTTCGTATTACTGCATTGATTGAAGAAACAGGATCCCTGAAGGCTGAAGTGACTATTAAAGTTCGAGCTGAGTTCAACTCAAGTACCAATGCTAGCACTGTTCTTATACAGATGCCCCTGCCATCATTGACAGCTCGTGTTAATTTTGACTTAGAACCTGGAGCAGTTGGACACACCACTGATTTTAAGGAAACAAATAGAAGACTGGAATGGGGCCTGAAAAAGGTTGTTGGTGGATCTGAACATACTTTACGTGCAAAGCTGACGTTTTCGCAGGAATTACATGGAAATATCATGAAAGAAGCAGGACCTGTTAGCATGACTTTCACCATACCTATGTACAATGCTTCAAGGCTTCAGGTTAAGTATTTGCAAATAGCGAAGAAATCAAAAGCGCATAATCCTTATCGCTGGGTTAGATATGTAACAGAAGCAAACTCATACGTTGCCCGGTTGTAA 1332 0.4069 MILQFFVLSQRGDNIVYRDYRGEAQKGSAETFFRKVKFWKEDVEGDAPPVFNIDGVNYFHVKVAGLLFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSFRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYIFNEPIVIDAARMPPLGPASIFMQGTKRMPGTAITKSVVANEPGGRKRDEIFVDVIEKISVTFNSSGFILTSEIDGTIQMKSYLSGNPEIRLALNEDLSIGTSDYRGSAAVILDDCNFHESVHLDNFEVDRTLSLVPPDGEFPVMNYRMTQPFKPPFRITALIEETGSLKAEVTIKVRAEFNSSTNASTVLIQMPLPSLTARVNFDLEPGAVGHTTDFKETNRRLEWGLKKVVGGSEHTLRAKLTFSQELHGNIMKEAGPVSMTFTIPMYNASRLQVKYLQIAKKSKAHNPYRWVRYVTEANSYVARL* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1604 443 Gene3D - 1 141 - -
Vra5g1604 443 PRINTS Clathrin coat assembly protein signature 12 32 IPR001392 GO:0006886|GO:0016192|GO:0030131
Vra5g1604 443 PRINTS Clathrin coat assembly protein signature 101 128 IPR001392 GO:0006886|GO:0016192|GO:0030131
Vra5g1604 443 PRINTS Clathrin coat assembly protein signature 248 275 IPR001392 GO:0006886|GO:0016192|GO:0030131
Vra5g1604 443 PRINTS Clathrin coat assembly protein signature 361 372 IPR001392 GO:0006886|GO:0016192|GO:0030131
Vra5g1604 443 ProSiteProfiles Mu homology domain (MHD) profile. 183 442 IPR028565 -
Vra5g1604 443 CDD AP-4_Mu4_Cterm 178 443 - -
Vra5g1604 443 PANTHER AP COMPLEX SUBUNIT MU 2 443 - -
Vra5g1604 443 CDD AP4_Mu_N 4 143 - -
Vra5g1604 443 Gene3D Mu homology domain, subdomain B 290 442 - -
Vra5g1604 443 Gene3D Mu homology domain, subdomain B 182 438 - -
Vra5g1604 443 PANTHER AP-4 COMPLEX SUBUNIT MU-LIKE 2 443 - -
Vra5g1604 443 SUPERFAMILY SNARE-like 1 141 IPR011012 -
Vra5g1604 443 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 182 442 IPR036168 -
Vra5g1604 443 Pfam Adaptor complexes medium subunit family 182 442 IPR028565 -
Vra5g1604 443 PIRSF AP_complex_mu 1 443 IPR001392 GO:0006886|GO:0016192|GO:0030131
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1604 Vra-Chr5 22489892 22495661 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1604 K12402 - gmx:100800985 847.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1604 5 22489892 22495661 Vra5g1604 5 22489892 22495661 ECH