Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1596 ATGGCGGTGCTTCGTGGGTTGCTTTTGGTTTTCTTTGTTCTGTATGTGAGTAAAGTGGTCCGTGTAGAAGCAGATGACGGTGGTGGGTTTGTGAAAACAAGAGGAGTGCAACTTACACTGAATGGAAGCCCCTTCTATGCTAATGGCTTCAATGCCTATTGGCTTATGTACATTGCCTCTGATCCTTCTCAGAGAAACAAAGTCTCTTCAGCCTTTCAACAGGCTTCAAATCATGGACTCAACATAGCCAGAACTTGGGCTTTCAGTGATGGTGGCTACAAGCCCTTACAATACTCTCCTGGATCCTACGATGAACAAGTTTTCCAGGGATTGGATTTCGCAATAGCGGAAGCAAGAAAATACGGGATCAAGCTGGTTCTGAGTTTGGTGAATAACTATGAGAACATGGGTGGCAAGAAACAGTATGTAGAATGGGCAAGGAGTCAAGGACAGTCCATAAATTCTGAAGATGACTTCTTCACAAATCCTGTGGCCAAGGGATTCTACAAAAACCACATCAAGGCTGTTCTTACAAGACGTAACAGCATCACTGGAATTGCATACAAAGACGATCCAACTATAATGGCTTGGGAACTTATGAATGAGATTAGGTGCCCTTCTGATCAATCAGGAAAAACAGTTCAGGCTTGGATTTCTGAGATGGCATCTTACCTGAAATCCATAGATGGAAACCACTTGCTGGAAGCAGGTTTGGAGGGTTTCTATGGCCAGTCAAAGCTTCAGTCCAATCCAAACTTCAATGTTGGAACTGATTTCATTGCAAACAACCAAATCCCCGGCATCGATTTCGCAACAGTTCACTCCTACCCAGACCAATGGCTATCGAGTTCAGGTTATGAAGAACAAATATCATTCTTAGAGCGGTGGGTGGATGAGCACATCCAAGATGCGCAGAACACTCTTCACAAGCCAGTTCTCTTTGCGGAGTTCGGCATTTCCACAAAAAGCTTCGGTGGCAACTCATCACCAAGGGATCGATTATTCAACACGGTTTATTCAGCAATATACTCATCCGCAAGTAGTGGTGGTGCTGCTGTTGGTGGCTTGTTCTGGCAGCTTCTAGCTCAAGGAATGGATTCCTTTCGAGATGGTTACGAGGTGGTCTTAGATGAAAGCCCCTCAACGGCTACTTTGATCGCTCAACAGTCTCAAAAATTAAACCACATTCGCAAGATGTACGCCAGACTCAGAAACATCGAGAAATGGAATAGAGCTAAGGAAATCAGAGGCTCACAATGGCATGTCGGTGCTAACGTTGGAAACTGA 1287 0.4468 MAVLRGLLLVFFVLYVSKVVRVEADDGGGFVKTRGVQLTLNGSPFYANGFNAYWLMYIASDPSQRNKVSSAFQQASNHGLNIARTWAFSDGGYKPLQYSPGSYDEQVFQGLDFAIAEARKYGIKLVLSLVNNYENMGGKKQYVEWARSQGQSINSEDDFFTNPVAKGFYKNHIKAVLTRRNSITGIAYKDDPTIMAWELMNEIRCPSDQSGKTVQAWISEMASYLKSIDGNHLLEAGLEGFYGQSKLQSNPNFNVGTDFIANNQIPGIDFATVHSYPDQWLSSSGYEEQISFLERWVDEHIQDAQNTLHKPVLFAEFGISTKSFGGNSSPRDRLFNTVYSAIYSSASSGGAAVGGLFWQLLAQGMDSFRDGYEVVLDESPSTATLIAQQSQKLNHIRKMYARLRNIEKWNRAKEIRGSQWHVGANVGN* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1596 428 Pfam Cellulase (glycosyl hydrolase family 5) 41 323 IPR001547 GO:0004553|GO:0071704
Vra5g1596 428 Gene3D Glycosidases 27 397 - -
Vra5g1596 428 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE-LIKE PROTEIN 7 416 - -
Vra5g1596 428 PANTHER - 7 416 IPR045053 GO:0004553
Vra5g1596 428 SUPERFAMILY (Trans)glycosidases 30 385 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1596 Vra-Chr5 22438367 22441455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1596 22 413 Glycoside Hydrolase AT5G66460 66.329 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1596 K19355 - gmx:100814337 743.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1596 5 22438367 22441455 Vra5g1596 5 22438367 22441455 ECH