Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1578 ATGGCGGCGGAGATACCGTGCTGCGGGACAAAGTTCTCATTGTACGTGTTGGTGATCGTAGGATTGGTCTGCTTCGCGGGCTTAATGGCTGGTCTCACTCTCGGACTCATGTCTCTCGGACTCGTCGACCTCGAAGTTCTCATGAAATCTGGCCGTCCTCAGGATCGAATTCACGCTTCGAAAATTTATCCAGTGGTTAAGAATCAACATCTTCTGCTTTGCACACTTCTAATTGGAAACTCCTTAGCCATGGAGGCTCTTCCCATTTTTCTTGATTCACTGGTGCATCCTGCTGCTGCAATCTTGATTTCGGTCACTCTCATCCTCATGTTTGGAGAGATATTGCCGCAGGCAATTTGCACAAGATATGGATTGACAGTTGGAGCAACGCTGGCTCCATTTGTTCGTGTTCTTCTTCTTGTTTTCTACCCGGTTTCTTATCCAATCAGCAAGGTTCTTGATTGGATGTTGGGTAAAGGACATGCTGCCCTTTTGAAGAGGGCAGAGCTCAAGACTTTTGTGAACTTTCATGGAAATGAGGCCGGTAAAGGAGGAGATTTAACTCATGACGAAACAACCATCATTACTGGGGCACTTGAGTTGACAGAAAAGACTGCAAAAGATGCCATGACTCCCATATCAAAGGCATTTTCCCTTGATCTGGATGCAACTCTAAATTTGGAGACACTGAATTCGATAATGACAATTGGTCATAGTAGAGTTCCAGTTTATGCAGGAGAGAAAACTAATATTATTGGACTTGTTCTGGTGAAAAATCTCTTTATGGTTGATTCAAAGGCTGCAGTTCCTCTAAGAAAAATGGTCATCAGAAAAATTCCTCGTGTTTCAGAGAACATGCCTCTGTATGATATTTTGAACGAATTTCAGAAGGGTCATAGTCATATTGCAGTAGTGTATAAGGATCTGAACAGTAAAAGTGAGGCCCCAAAGAAGGTTAAAGATGGAGAACAGCATGATCTCAGGGACAACTATAAGAACAAGGGAGAGAATGCACCCTTGGATAAAGGTTCTAAATTGGAGTCAGGTGATACTTTGACTACTGCTACTAAGATTGAAGGTGCTCAACAAGCAAAGAAAAGTCCACCAGCAACTCCTGCTTTTAAAAAGCGACATAGAGGGTGTTCATATTGCATCCTGGACCTTGATAATGCGCCCCTGCCAGTATTTCCACCCAATGAAGTGGTTGTTGGTGTTATTACAATGGAGGATGTCATCGAAGAGCTTCTTCAGGAGGAGATATTGGATGAAACTGATGAATATGTCAATATCCATAACAAGATAAAAGTTAACATGAATGCTTCAAAGGAGAAGGCTTCTGATGCAAATCTGATGCAACCTTCTCAAGAGGTTCAAGGGCACACACCAACTAATTCAATTTCTACAGCTACTTCTGCAACAGGTTCACCTACCACAATCGATCTAATCTCTGAAAGTGAGTCACTAAGGAATCAATAG 1476 0.4255 MAAEIPCCGTKFSLYVLVIVGLVCFAGLMAGLTLGLMSLGLVDLEVLMKSGRPQDRIHASKIYPVVKNQHLLLCTLLIGNSLAMEALPIFLDSLVHPAAAILISVTLILMFGEILPQAICTRYGLTVGATLAPFVRVLLLVFYPVSYPISKVLDWMLGKGHAALLKRAELKTFVNFHGNEAGKGGDLTHDETTIITGALELTEKTAKDAMTPISKAFSLDLDATLNLETLNSIMTIGHSRVPVYAGEKTNIIGLVLVKNLFMVDSKAAVPLRKMVIRKIPRVSENMPLYDILNEFQKGHSHIAVVYKDLNSKSEAPKKVKDGEQHDLRDNYKNKGENAPLDKGSKLESGDTLTTATKIEGAQQAKKSPPATPAFKKRHRGCSYCILDLDNAPLPVFPPNEVVVGVITMEDVIEELLQEEILDETDEYVNIHNKIKVNMNASKEKASDANLMQPSQEVQGHTPTNSISTATSATGSPTTIDLISESESLRNQ* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1578 491 MobiDBLite consensus disorder prediction 314 349 - -
Vra5g1578 491 Gene3D - 377 423 IPR046342 -
Vra5g1578 491 Gene3D - 189 323 IPR046342 -
Vra5g1578 491 MobiDBLite consensus disorder prediction 444 491 - -
Vra5g1578 491 MobiDBLite consensus disorder prediction 314 343 - -
Vra5g1578 491 PANTHER ANCIENT CONSERVED DOMAIN PROTEIN-RELATED 1 475 IPR045095 GO:0010960
Vra5g1578 491 PANTHER DOMAIN-CONTAINING PROTEIN, PUTATIVE, EXPRESSED-RELATED 1 475 - -
Vra5g1578 491 CDD CBS_pair_CorC_HlyC_assoc 205 306 IPR044751 -
Vra5g1578 491 Pfam Cyclin M transmembrane N-terminal domain 18 189 IPR002550 -
Vra5g1578 491 SUPERFAMILY CBS-domain pair 195 417 IPR046342 -
Vra5g1578 491 ProSiteProfiles CNNM transmembrane domain profile. 8 191 IPR002550 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1578 Vra-Chr5 22341238 22345805 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1578 K16302 - gmx:100804572 853.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1578 5 22341238 22345805 Vra5g1578 5 22341238 22345805 ECH