LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra5g1576	ATGGCATCATCCATTATCATTTCCGATACTCAGCCATGGAAGGACCTGAAGGCGCATGTGGAGGACATCAAGAAAACGCATCTTCGCGATCTGTTGACCGATGATAAGCGGTGCCAGTCCATGTTCCTTGAGTTCGACGACATTCTGTTGGACTATTCAAGGCAGCAAGCCACTCTCGAAACTATCCAAAAACTACTTAAATTGGCGGAGGCTGCATCGCTCAAAGATAAGATTAACCGCATGTACAGCGGGGAACATATTAACAGCACGGAAAACAGGTCCGTGCTTCACGTCGCCCTTCGTGCTTCAAGGGATGCTGTCATACAAAGTGATGGGAAAAATGTTGTACCAGAAGTTTGGAAAGTTCTTGACAACATCCAGGAGTTCTCTGAGCGGGTTCGCAATGGTTCTTGGGTTGGTGCTACAGGAAAGGCTTTGAAGGACGTTGTTGCAATTGGTATTGGGGGAAGCTTCTTAGGTCCGCTGTTTGTACACACTGCACTTCAAACAGACCCTGAAGCTATTGAATCTGCAAGGGGTCGTCAGCTGCGCTTTCTTGCAAATGTTGATCCTATTGACGTTGCAAGAAATATCACAGGATTAAATCCTGAAACAACACTTGTTGTGGTTGTTTCAAAGACTTTTACAACAGCTGAAACCATGCTGAATGCTCGAACTCTTAGAGAATGGATATCATCTGCACTTGGGCCCTCTGCTGTTGCAAAGCATATGGTGGCTGTTAGCACAAATCTCAAGCTTGTGGAACAGTTTGGTATTGACCCTAACAATGCTTTTGCGTTTTGGGATTGGGTCGGTGGTCGATACAGTGTTTGCAGTGCTGTTGGAGTTTTGCCATTGTCTTTACAATACGGTTTCTCAGTAATAGAGAAGTTCTTAAGTGGGGCTTCAAGCATTGATCAACATTTCTATTCACAGCCCTTTGAAAGCAATATACCTGTGCTTCTCGGTTTGTTGAGCATATGGAATGTTTCATTTCTTGGATATCCTGCCAGAGCCATCTTACCTTATAGTCAAGCTCTGGAGAAGTTGGCCCCCCACATTCAACAGGTTAGCATGGAGAGTAATGGCAAGGGTGTTTCAATTGATGGTGTTCCTCTACCATTTGAGGCTGGCGAAATTGATTTTGGTGAACCAGGAACTAATGGGCAGCATAGCTTTTATCAGCTCATACATCAGGGGCGTGTAATTCCTTGTGATTTTATTGGAGTTGTAAAAAGTCAGCAACCTGTCTTTCTGAAAGGTGAAGTAGTGAGTAACCATGATGAACTCATGTCCAACTATTTTGCACAACCTGATGCCCTTGCATATGGAAAGACAGCAGACCAGCTGCAAAAGGAGAATGTTTCCCCACACCTTATTCCTCACAAGACATTCAGTGGTAACCGACCTTCTCTCAGCCTACTGCTTCCATCATTGAATGCTTACAATATTGGGCAGTTGTTGGCAATCTATGAACACAGAATTGCTGTAGAGGGTTTCATTTGGGGAATCAATTCTTTTGATCAGTGGGGAGTAGAGCTGGGCAAGTCACTGGCTACTCAAGTCAGAAAACAACTTAATGCATCTCGAACAAAACAAGAACCAGTTCAAGGTTTTAATTTCAGTACAACAACAATGTTGAATAGATATCTTCAGGCAAGTTCAGATATCCCAGCGGATCTGCCAACTTCTTTACCGAAGATCTGA	1707	0.4394	MASSIIISDTQPWKDLKAHVEDIKKTHLRDLLTDDKRCQSMFLEFDDILLDYSRQQATLETIQKLLKLAEAASLKDKINRMYSGEHINSTENRSVLHVALRASRDAVIQSDGKNVVPEVWKVLDNIQEFSERVRNGSWVGATGKALKDVVAIGIGGSFLGPLFVHTALQTDPEAIESARGRQLRFLANVDPIDVARNITGLNPETTLVVVVSKTFTTAETMLNARTLREWISSALGPSAVAKHMVAVSTNLKLVEQFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVIEKFLSGASSIDQHFYSQPFESNIPVLLGLLSIWNVSFLGYPARAILPYSQALEKLAPHIQQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVFLKGEVVSNHDELMSNYFAQPDALAYGKTADQLQKENVSPHLIPHKTFSGNRPSLSLLLPSLNAYNIGQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLNASRTKQEPVQGFNFSTTTMLNRYLQASSDIPADLPTSLPKI*	569

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra5g1576	568	Gene3D	-	509	554	IPR023096	GO:0004347\|GO:0006096
	Vra5g1576	568	PRINTS	Glucose-6-phosphate isomerase signature	149	168	IPR001672	GO:0004347\|GO:0006094\|GO:0006096
	Vra5g1576	568	PRINTS	Glucose-6-phosphate isomerase signature	265	283	IPR001672	GO:0004347\|GO:0006094\|GO:0006096
	Vra5g1576	568	PRINTS	Glucose-6-phosphate isomerase signature	343	364	IPR001672	GO:0004347\|GO:0006094\|GO:0006096
	Vra5g1576	568	PRINTS	Glucose-6-phosphate isomerase signature	467	485	IPR001672	GO:0004347\|GO:0006094\|GO:0006096
	Vra5g1576	568	PRINTS	Glucose-6-phosphate isomerase signature	485	499	IPR001672	GO:0004347\|GO:0006094\|GO:0006096
	Vra5g1576	568	PRINTS	Glucose-6-phosphate isomerase signature	499	512	IPR001672	GO:0004347\|GO:0006094\|GO:0006096
	Vra5g1576	568	SUPERFAMILY	SIS domain	8	554	IPR046348	GO:0097367\|GO:1901135
	Vra5g1576	568	ProSiteProfiles	Glucose-6-phosphate isomerase family profile.	10	553	IPR001672	GO:0004347\|GO:0006094\|GO:0006096
	Vra5g1576	568	PANTHER	GLUCOSE-6-PHOSPHATE ISOMERASE	7	554	IPR001672	GO:0004347\|GO:0006094\|GO:0006096
	Vra5g1576	568	ProSitePatterns	Phosphoglucose isomerase signature 2.	499	516	IPR018189	GO:0004347\|GO:0006094\|GO:0006096
	Vra5g1576	568	Pfam	Phosphoglucose isomerase	51	546	IPR001672	GO:0004347\|GO:0006094\|GO:0006096
	Vra5g1576	568	CDD	SIS_PGI_1	120	288	IPR035476	-
	Vra5g1576	568	ProSitePatterns	Phosphoglucose isomerase signature 1.	269	282	IPR018189	GO:0004347\|GO:0006094\|GO:0006096
	Vra5g1576	568	Gene3D	-	97	296	-	-
	Vra5g1576	568	Hamap	Glucose-6-phosphate isomerase [pgi].	45	526	IPR001672	GO:0004347\|GO:0006094\|GO:0006096
	Vra5g1576	568	Gene3D	-	13	508	-	-
	Vra5g1576	568	CDD	SIS_PGI_2	336	522	IPR035482	-
	Vra5g1576	568	PANTHER	GLUCOSE-6-PHOSPHATE ISOMERASE	7	554	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra5g1576	Vra-Chr5	22323801	22333485	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra5g1576	K01810		-	gmx:100807719	1057.74

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vra5g1576	5	22323801	22333485	Vra5g1576	5	22323801	22333485	ECH