Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1564 ATGCTAGAGGCAATGGAAAGCTCAGTCAATGGTGGGTTCTCCCATTTGCAGAGCTGCGGAGACAGCAGCGAAGAGGAGTTATCCGTGCTGCCACGTCACACCAAAGTGGTGGTAACCGGAAATAATCGTACCAAATCGGTGCTCGTTGGTCTTCAAGGTGTTGTTAAGAAAGCCGTTGGTCTGGGAGGATGGCATTGGCTGGTTCTTACCAATGGTATTGAAGTGAAGTTACAAAGAAATGCCCTCAGTGTAATTGAAGCACCCACGGGTAATGAGGAAGATGATGAACTGGAATTTGAAAATATGCAGTGGAATGGATCTGATATGGCATCGGACGACACACAGAAGTCCCACAAACCGAGGCACAGAATGCATAGAACATTGGGATCATCTCATCACAAGACCATGAGTAGGTCCTTCTCTGGCGATTCACACTCAAAGGGGTCCGTTTCTATGCCTCATGGGTCCGCGAAGGTGGACTTGAGCAAACTTGAAATGGCTGCATTGTGGAGATATTGGCGACATTTTAATCTTGTGGATGCGGTCCCAAACCCATCAAAAGAGCAGCTAGTAGACATTGTTCAGAGGCATTTCATGTCACAGCAAATAGACGAGTTGCAAGTGATTATGGGATTTGTACAAGCTGCAAAGAGGCTGAAGACAGTGTGCAAATGA 675 0.4681 MLEAMESSVNGGFSHLQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDELEFENMQWNGSDMASDDTQKSHKPRHRMHRTLGSSHHKTMSRSFSGDSHSKGSVSMPHGSAKVDLSKLEMAALWRYWRHFNLVDAVPNPSKEQLVDIVQRHFMSQQIDELQVIMGFVQAAKRLKTVCK* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1564 224 Pfam Sin3 binding region of histone deacetylase complex subunit SAP30 164 217 IPR025718 GO:0005515
Vra5g1564 224 Gene3D - 139 224 IPR038291 -
Vra5g1564 224 PANTHER HISTONE DEACETYLASE COMPLEX SUBUNIT SAP30 SIN3-BINDING PROTEIN 1 224 - -
Vra5g1564 224 PANTHER SAP30 1 224 IPR024145 -
Vra5g1564 224 MobiDBLite consensus disorder prediction 133 151 - -
Vra5g1564 224 MobiDBLite consensus disorder prediction 107 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1564 Vra-Chr5 22222452 22225727 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1564 - - gmx:100809195 431.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1564 5 22222452 22225727 Vra5g1564 5 22222452 22225727 ECH