Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1557 ATGGCATCTCCCAAAGGGCTATTATTCTCCTACAAAAACTTGTTCAGGATGATAACCTTTCCATGTCTAACTACTCCCAGGCCCAAACCATTACCGCCTCCTGCACCTCTTATTGGGCCTTCCGGCCCAAAATACGATAAAGGGCTGAAAGACGTTTTCGATCACTTGGACGTTGACAAAGATGGCAAGATCTCGAGCAGTGAACTAATGGATTACTTTGCGTCGGTTGGCGAGTCCGTCAGTCATAAAGTGGCGGAGAGAGTGATAAACGAGTTTGACTCGGACGGTGACGAGTTGCTGGATTTCGGTGACTTTGAAAAACTGATGAAGCAAGAGGAGAGTAAGGAGGTGGAGGATGTTCTACGAAGCGCGTTCGAGATGTTCGAGGTTGAGAAAGGGTGTGGCTGCATAACGCCAAAGGGGTTGCAACAAATGTTGCGGCAACTGGGAGATGTGAAGTCCCATGATGAGTGTGTGGCCATGATTCGACCCTTCGATCTCGACGGCAATGGCTTCCTTGATTTTCACGAATTTCAGCAGATGATGTCCCCAACTTGA 558 0.4839 MASPKGLLFSYKNLFRMITFPCLTTPRPKPLPPPAPLIGPSGPKYDKGLKDVFDHLDVDKDGKISSSELMDYFASVGESVSHKVAERVINEFDSDGDELLDFGDFEKLMKQEESKEVEDVLRSAFEMFEVEKGCGCITPKGLQQMLRQLGDVKSHDECVAMIRPFDLDGNGFLDFHEFQQMMSPT* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1557 185 ProSiteProfiles EF-hand calcium-binding domain profile. 44 79 IPR002048 GO:0005509
Vra5g1557 185 PANTHER CALCIUM BINDING PROTEIN 25 183 - -
Vra5g1557 185 Pfam EF-hand domain pair 48 110 IPR002048 GO:0005509
Vra5g1557 185 SMART efh_1 48 76 IPR002048 GO:0005509
Vra5g1557 185 SMART efh_1 157 185 IPR002048 GO:0005509
Vra5g1557 185 SMART efh_1 84 112 IPR002048 GO:0005509
Vra5g1557 185 Gene3D - 112 185 - -
Vra5g1557 185 CDD EFh 49 110 IPR002048 GO:0005509
Vra5g1557 185 PANTHER CALMODULIN 25 183 - -
Vra5g1557 185 ProSitePatterns EF-hand calcium-binding domain. 57 69 IPR018247 -
Vra5g1557 185 ProSiteProfiles EF-hand calcium-binding domain profile. 153 185 IPR002048 GO:0005509
Vra5g1557 185 SUPERFAMILY EF-hand 30 182 IPR011992 -
Vra5g1557 185 ProSitePatterns EF-hand calcium-binding domain. 166 178 IPR018247 -
Vra5g1557 185 Gene3D - 43 111 - -
Vra5g1557 185 ProSiteProfiles EF-hand calcium-binding domain profile. 80 115 IPR002048 GO:0005509
Vra5g1557 185 Pfam EF-hand domain pair 135 182 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1557 Vra-Chr5 22159117 22160186 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1557 49 183 EF-hand Containing Proteins AT3G50770 56.429 5.25e-49 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1557 K13448 - gmx:100775336 282.722
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1557 5 22159117 22160186 Vra5g1557 5 22159117 22160186 ECH