Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1556 ATGGCGAAATCGAGCGCCGACGATGCCGAGCTTCGGCGAGCATGCCAGCTCGCAGTTGAGGGCACCAAGCACAAGGTCGTTCTCTGCATTCGGACCGTCAAGACTCACGGCACGTGGGGAAAATCTGCTAAGGTTCGCCAAATGGCTAAGCCTAGGGTGCTCGTTCTATGCACAAAAGCGAAAGGTCAGCGGACAAAAGCTTTTCTTCGAGTTTTAAAGTATTCAACAGGAGGGGTGCTTGAGCCTGCTAAGTTATACAAGCTAAAGCACCTCTCAAAAATGGAAGTTGTAACAAATGACCCCAGTGGATGTACATTTACACTGGGGTTTGATAACCTTAGAAGCCAGAGCGTGGCTCCTTCACAGTGGACAATGCGCAATACGGATGACAGAAATCGCTTCCTGCTTTGTATCTTAAATATCTGCAAAGATGTCCTGGGTCGCTTACCGAAGGTTGTTGGTATTGATGTTGTGGAGATGGCTCTTTGGGCTAAGGAAAATACACCTGCAGTTTCCGCTCAAAGTAACCAACACGGTGATGCTTCTATTGCATCTTCTGTGACTGAATCAGAATTGAAAGTCTATGTTGAAAAGGAACTTGTCTCCCAGGCAGAGGAAGAGGACATAGAGGCTCTTCTGGGAACTTATATCATGGGTGTTGGTGAAGCAGAGGCATTTTCTGAAAGGTTAAAAAGAGAGCTCCAAGCTCTGGAAGCAGCAAATGTGCATGCCATTTTAGAAAGTGAACCTTTGATAGATGAGGTATTGCACGGGCTTGAGTCAGCAACAAATAGTCTGGAAGACATGAATGAATGGTTAGCCATGTTCAACGTAAAACTTCGACACATGAGGGAAGATATTGAATCAATTGAAACCCGCAATAACAAGTTGGAAATGCAAAATGTAAATAACAGATCTCTTATTGAAGAGCTTGATAAGCTTCTTCAGCAATTGAGTATCCCTTCAGAGTATTCAGCATGTTTGACAGGAGATTCATTTGATGAAGCACAAATGCAGCAAAACATAGAGGCATGTGAGTGGTTGACAACTGCCATGCGTGGTCTTGAAGTGCCTAACATAGATCCTACTTATGCAAAAATGAGAGGAGTTAAAGAGAAGCGAGGAGAACTTCAAATAATAAAGTCTACTTTTGTTGGGAAAGCTTCTGAGTACATGAGAAATTACTTTGCTACTTTTGTGGACTTTATGTTGAATGATAAAAATTACTTCTCTCAGCGAGGGCAGTTGAAAAGGCCAGATCATGCTGACTTGAGGTTCAAGTGCAGGACATATGCACGCCTTCTTAAGCATTTAAAGATTCTTGATAAGAATTGTTTGGGTCCACTGAGAAAAGCCTATTGCAGTTCTCTAAACTTGCTTCTTCGCAAGGAGGCCCGGGAGTTTGCTAATGAACTTCGTGCTGGTGTGAAAACTTCTAAAACCCCCTCTGTTTGGCTTGAAGTCTTCACGGGGTCCGGTCAAAATGTAAATCCTGCTGACACTGCAACAGTTTCTGAAGCATATGCAAAGATGCTCACGATTTTTATCCCACTCTTGGTGGATGAGAGCTTGTTTTTTGCACACTTCATGTGCTTTGAAGTTCCTTCAGCTGTTGATGGTAATAAAACTACACACAATGATGAGGATGATGATGGTATTGCATCTGGTAAAGTTGCTGTGGATCTTGCAGCTTTAAATGAATCACTTCAGGATTTGCTTGATGGAATTCAAGAAGACTTTGGTTCTGTTGTGGACTGGGCATACAAGATTGATCCTTTGTGCTGCATATCAATGCATGGAACTACAGAGCGCTATCTCTCGGGTCAGAAAGCTGATGCAGCAGGTTATGTACGCGTTTTGCTTGATGACTTAGAGGCTCGCATATCCTTTCAGTTCGGTCGGTTTGTGGACGATGCTTGCCATCAAATTGAAAGAAATGAGCGCAATGCTCGCCAAACAGGTGTCCTACCATACATTCCTAGATTTGCAGCCCTTGCAACACGGATGGAACAGTTTGTTGCAGGACAGTCGAGGGATTTGGTTGACCAAGCATACACAAAATTTGTCAGCATAATGTTTGTAACTTTAGAAAAGAATGCACAAGCAGATCCGAAGTATGCAGATATTTTTCTCATAGAAAACTATGCCGCATTTCAGAATAGTTTGTATGACCTTGCAAATGTTGTACCCACTTTAGCGAAGTTTTATCATCAGGCTAGTGAAGCCTACGAGCAAGCTTGTACACGCCATATTAGTGTGATTATCTACTATCAATTTGAACGCCTTTTCCAGTTTGCTCGAAAGATCGAGGACTTGATATTGAATAATGTTGCACCTGAAGAGATTCCTTTCCAAGTTGGGCTGTCAAAAGCGGATCTACGGAAGACGTTAAAGTCCAGTTTATCCGGGGTGGACAAGTCCATTGCTGCCATGTATAAGAAGTTGCAGAAAAACTTGACTTCCGAGGAACTCTTACCTTCCTTATGGGATAAATGCAAGAAGGATTTTCTTGATAAGTACGAAACCTTTGTCCAACTTGTTGCCAAGATATACCCAGCTGAGTCAGTCCCTTCTGTGGGGGAGTTGCGAGACCTTTTAGCTTCCATGTAA 2610 0.4303 MAKSSADDAELRRACQLAVEGTKHKVVLCIRTVKTHGTWGKSAKVRQMAKPRVLVLCTKAKGQRTKAFLRVLKYSTGGVLEPAKLYKLKHLSKMEVVTNDPSGCTFTLGFDNLRSQSVAPSQWTMRNTDDRNRFLLCILNICKDVLGRLPKVVGIDVVEMALWAKENTPAVSAQSNQHGDASIASSVTESELKVYVEKELVSQAEEEDIEALLGTYIMGVGEAEAFSERLKRELQALEAANVHAILESEPLIDEVLHGLESATNSLEDMNEWLAMFNVKLRHMREDIESIETRNNKLEMQNVNNRSLIEELDKLLQQLSIPSEYSACLTGDSFDEAQMQQNIEACEWLTTAMRGLEVPNIDPTYAKMRGVKEKRGELQIIKSTFVGKASEYMRNYFATFVDFMLNDKNYFSQRGQLKRPDHADLRFKCRTYARLLKHLKILDKNCLGPLRKAYCSSLNLLLRKEAREFANELRAGVKTSKTPSVWLEVFTGSGQNVNPADTATVSEAYAKMLTIFIPLLVDESLFFAHFMCFEVPSAVDGNKTTHNDEDDDGIASGKVAVDLAALNESLQDLLDGIQEDFGSVVDWAYKIDPLCCISMHGTTERYLSGQKADAAGYVRVLLDDLEARISFQFGRFVDDACHQIERNERNARQTGVLPYIPRFAALATRMEQFVAGQSRDLVDQAYTKFVSIMFVTLEKNAQADPKYADIFLIENYAAFQNSLYDLANVVPTLAKFYHQASEAYEQACTRHISVIIYYQFERLFQFARKIEDLILNNVAPEEIPFQVGLSKADLRKTLKSSLSGVDKSIAAMYKKLQKNLTSEELLPSLWDKCKKDFLDKYETFVQLVAKIYPAESVPSVGELRDLLASM* 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1556 869 Pfam Exocyst complex component Sec3 223 488 IPR019160 GO:0000145|GO:0006887
Vra5g1556 869 Pfam Exocyst complex component Sec3 561 852 IPR019160 GO:0000145|GO:0006887
Vra5g1556 869 PANTHER EXOCYST COMPLEX COMPONENT SEC3B 1 869 - -
Vra5g1556 869 SMART Sec3_PIP2_bind_2 47 145 IPR028258 -
Vra5g1556 869 PANTHER SEC3/SYNTAXIN-RELATED 1 869 - -
Vra5g1556 869 Coils Coil 220 247 - -
Vra5g1556 869 Coils Coil 280 317 - -
Vra5g1556 869 Pfam Exocyst complex component SEC3 N-terminal PIP2 binding PH 48 143 IPR028258 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1556 Vra-Chr5 22141422 22156857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1556 1 869 EF-hand Containing Proteins AT1G47550 77.416 0.0 1440
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1556 K19983 - gmx:100800803 1540.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1556 5 22141422 22156857 Vra5g1556 5 22141422 22156857 ECH