Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1521 ATGCCTCATTGTATGGCAGTGATCGAGCCGCAGTATACGGCTTCGGGGAATGTTGAAGTTTTGCCAGGCGTAGATGATGCTGTGGAGGAGGATGACGTGCAGAGGCTCGGGGAGAGAGTTCTGCGTGGACCGCTGCAGAAGATGGTGGTTTTACGAGAGACTGTTAGCGGAGGCGGAGCTGGGAGTAGCGACAGTGGAGAAGGTGCTGAAGTTATTGGCAAGTCAAAGAAAACAGAAAGAGTGTTTCAAGACCAAACGGAATTCTTCAGGGCTGAATCCGGAACAATGAAAATATTGGTGACCGGTGCATCCGGTTTCCTCGGGGGAAGACTCTGCGACGCGCTGCTCCGGCAAGGTTACTCCGTGAGGGTTCTGGTTAGGTCCACCAGCGATATCTCTTCTCTTTCTCCAGATATTGAAATCTTCCACGGCGACATCACCGACTACGCCTCTATCCTCGCCGCTTGCTCCTCCTGCACCATCGTATTCCACCTTGCCGCTCTCGTCGAACCCTGGCTTCCCGACCCCTCCAAATTCTTCTCCGTCCATCACGAGAAATATTTCTGTACTGAATATGAGAAATCAAAGGTCGCTGCGGATAAAATTGCGCTGCAAGCTGCGTCGGAAGGGATGCCAATAGTGCTACTGTATCCTGGAGTGATCTATGGGCCAGGCAAGGTCACTGCAGGAAACATAGTTGCACGAATGCTAGTAGAACGCTTCAGTGGTCGATTACCAGGTTACGTAGGTTATGGAAGCGATAAATTTTCTTTCAGTCATGTTGAGGATGTGGTGGAGGGGCACATTTCAGCAATGAAGAAAGGAAAAGTTGGGAGTAGATATCTACTAACTGGGGAAAATGCTTCGTTGAAGCATGTTTTTGATATGGCCGCTGTGATTACTGATACTAAAAAACCAGTGTTTAGCATCCCTTTGTGGATGGTTGAAGTATACGGGTGGCTCTCAGTTTTGTTCTCTAGAATCACTGGAAAGCTCCCTTTCATCAGTCCCCCGACTGTCCATGTTCTAAGACACCGGTGGGAGTATTCTTGCGAGAAAGCTAAAAGTGAGCTAGATTATACGCCAAGAAGCTTGAAAGAAGGGCTTGCGGAGGTACTACTCTGGTTGAAGAACTCCAAGTTCATTAAATATTAG 1155 0.4866 MPHCMAVIEPQYTASGNVEVLPGVDDAVEEDDVQRLGERVLRGPLQKMVVLRETVSGGGAGSSDSGEGAEVIGKSKKTERVFQDQTEFFRAESGTMKILVTGASGFLGGRLCDALLRQGYSVRVLVRSTSDISSLSPDIEIFHGDITDYASILAACSSCTIVFHLAALVEPWLPDPSKFFSVHHEKYFCTEYEKSKVAADKIALQAASEGMPIVLLYPGVIYGPGKVTAGNIVARMLVERFSGRLPGYVGYGSDKFSFSHVEDVVEGHISAMKKGKVGSRYLLTGENASLKHVFDMAAVITDTKKPVFSIPLWMVEVYGWLSVLFSRITGKLPFISPPTVHVLRHRWEYSCEKAKSELDYTPRSLKEGLAEVLLWLKNSKFIKY* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1521 384 Pfam NAD dependent epimerase/dehydratase family 189 279 IPR001509 -
Vra5g1521 384 Pfam NAD dependent epimerase/dehydratase family 98 169 IPR001509 -
Vra5g1521 384 Gene3D - 89 184 - -
Vra5g1521 384 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 182 384 - -
Vra5g1521 384 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 98 182 - -
Vra5g1521 384 Gene3D - 185 383 - -
Vra5g1521 384 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 96 378 IPR036291 -
Vra5g1521 384 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 98 182 - -
Vra5g1521 384 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 182 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1521 Vra-Chr5 21860783 21864872 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1521 91 293 Miscellaneous Gene Families AT1G09510 24.151 3.76e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1521 K15891 - gmx:100792747 501.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1521 5 21860783 21864872 Vra5g1521 5 21860783 21864872 ECH