Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1511 ATGAAGTTGCCTTCTAAAACCAATCTTTCTCTGTTTCACTCTCTCTTGCAGGATGCAAGTTTTCCAATCCTTATCTTCCGACAACTGTTACAGGCCAATGCCATCCCCAACGATGTTACCTTTTCTTTACTCATCAAAGCATGCATTTCCTCCCATTCTTTCTCTTGCGCTTCACCCTCTGCGACCCTACAAGCCAACCAGATTCAAACCCACTTGTTGAAACGGGCTACTCAAATGTTTATGTATGTAAACACCGCTCTCATTGACTTTTACATGAAACTTGGGTTCACCAACCACGCACACCAACTGTTCGAAGATATGCCTTCAAAAGATGTTGTTTCATGGAACGTGTTGATTTGTGGATATTCACAAAATGGGTTCCCTCGTGATGCTTTTCAGCTCTTTGTGCAGATGCTGAGAGAGAGTTTTAGGCCTAACCAGACAACGATTGCTAGTTTGTTGCCCTCATTTGGTCGTCGCGAATTTATTCCTCAAGGTGGATCCGTTCATGGATTTGGGATCAAAGCTGGCTTTGGTTTGGATCCTCAGGTGAATAATGCCCTTACCTCTATGTATGCTAAATGCGATGACTTGGAAGCAGCCCTACTCTTGTTTGTAGAGATGGGTGAGAAAAATGTTATCTCTTGGAATACAATGATTGGTGCCTATTGCCAAAATGGTTTTTCGGACAAGGCGGTTTTGTGCTTTAAAGAGATGCTGAAGGAAGGTTTGGAACCCAGTCCAGTGACAATGATGAACCTTACGTCAGCTAATGCTGTTCCCGAAACTGTCCATTGTTATATTGTCAAATGTGGCTTTACCAGTGACGCTTCTGTTGTAACCTCCCTGGTTTGTCTATATGCAAAGCAAGGGCTCACAGATATGGCAAAATTGCTTTACAAGCGTTATCCCACAAAGGACCTGATTTCGTTAACTGCGATAATCTCTAGCTATTCGGAAAAAGGTGATGTAGAGTCTGCGGTGGAGTGTTTTACCCAAACTCTGCTACTGGGCATTAGACCAGATGCAGTTGCATTAATTGGTGTCCTACATGGAATCACTAATCCGTCTCATTTTTCCATTGGATGTGCTTTCCATGGTTATGGGTTGAAGAACGGGCTGACTAATGATTGCTTGGTTGCAAATGGGCTAATAAGCATGTATTCAAGATTTGATGAGATAGAAGCTGCATTATCTTTGTTTTTTGACAGGAGTGAAAAACCACTGGTCACTTGGAATTCTGTGATATCTGGTTGCGTTCAGGCTGCAAAATCAAGTGAAGCTATGGAGTTATTCTGCCAAATGAGCACATGTGGACAAAAACCAGATGCCATCACTATCGCTAGTCTACTATCAGGATGTTGCCAGCTTGAGTACCTGCGGATTGGAGAGACACTGCATGCATATATTCTTAGAAACAATGTGAAAGTGGAAGATTTTACAGGAACTGCTCTTATAGATATGTATTCTAAGTGTGGAAGATTAGATTATGCTGAAAAGGTATTTTATAGCATCAACGGTCCGTGTTTAGCAACATGGAACTCCATCATATCGGGTTATAGTTTATATGGACACGAACACAAAGCTTTCAGTTGTCTTTCCAAACTACTTGAACAAGGGCTAGAACCAGATAAAATCACCCTCTTGGGAGTTTTAGCAGCATGTACCCATGGCGGACTTGTCTACGAAGGAATTCAATACTTCCGTAGCATGACAGAAGAGTATGGTTTGAGACCAACTTTGCAGCATTACGCATGCATAGTTGGTCTCCTGGGTCGGGCAGGATTGTTCAAGGAAGCAATGGAGGTTATTAACAACATGGAAATTCGGCCTGATTCTGCTGTCTGGGGAGCATTGTTAAGTGCTTGTTGCATTCAACATGAAGTAAAGCTTGGGGAATGCTTGGCGAAACATTTGTTTTTATTGAATTACAAAAACGGTGGATTTTATGTTTTAATGTCGAATCTTTATGCCATTGTTGGGAGGTGGGATGACGTAGCAAGGGTGAGGGATATGATGAGAGACCATGGAGGAGATGGATGTTCAGGTGTTAGTGTCATTGAAGTGTCACCCCAAAGAGAAAATAATAACAATTTGTGCCCAACCGAGGTCTATTTTTTAATGCATCAGAATTTATAA 2139 0.4194 MKLPSKTNLSLFHSLLQDASFPILIFRQLLQANAIPNDVTFSLLIKACISSHSFSCASPSATLQANQIQTHLLKRATQMFMYVNTALIDFYMKLGFTNHAHQLFEDMPSKDVVSWNVLICGYSQNGFPRDAFQLFVQMLRESFRPNQTTIASLLPSFGRREFIPQGGSVHGFGIKAGFGLDPQVNNALTSMYAKCDDLEAALLLFVEMGEKNVISWNTMIGAYCQNGFSDKAVLCFKEMLKEGLEPSPVTMMNLTSANAVPETVHCYIVKCGFTSDASVVTSLVCLYAKQGLTDMAKLLYKRYPTKDLISLTAIISSYSEKGDVESAVECFTQTLLLGIRPDAVALIGVLHGITNPSHFSIGCAFHGYGLKNGLTNDCLVANGLISMYSRFDEIEAALSLFFDRSEKPLVTWNSVISGCVQAAKSSEAMELFCQMSTCGQKPDAITIASLLSGCCQLEYLRIGETLHAYILRNNVKVEDFTGTALIDMYSKCGRLDYAEKVFYSINGPCLATWNSIISGYSLYGHEHKAFSCLSKLLEQGLEPDKITLLGVLAACTHGGLVYEGIQYFRSMTEEYGLRPTLQHYACIVGLLGRAGLFKEAMEVINNMEIRPDSAVWGALLSACCIQHEVKLGECLAKHLFLLNYKNGGFYVLMSNLYAIVGRWDDVARVRDMMRDHGGDGCSGVSVIEVSPQRENNNNLCPTEVYFLMHQNL* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1511 712 TIGRFAM PPR: pentatricopeptide repeat domain 310 343 IPR002885 -
Vra5g1511 712 TIGRFAM PPR: pentatricopeptide repeat domain 113 146 IPR002885 -
Vra5g1511 712 TIGRFAM PPR: pentatricopeptide repeat domain 410 444 IPR002885 -
Vra5g1511 712 TIGRFAM PPR: pentatricopeptide repeat domain 214 247 IPR002885 -
Vra5g1511 712 TIGRFAM PPR: pentatricopeptide repeat domain 512 544 IPR002885 -
Vra5g1511 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Vra5g1511 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 111 145 IPR002885 -
Vra5g1511 712 PANTHER OS07G0578800 PROTEIN-RELATED 44 209 IPR045215 GO:0003723|GO:0009451
Vra5g1511 712 PANTHER OS07G0578800 PROTEIN-RELATED 303 707 IPR045215 GO:0003723|GO:0009451
Vra5g1511 712 PANTHER OS07G0578800 PROTEIN-RELATED 204 301 IPR045215 GO:0003723|GO:0009451
Vra5g1511 712 Pfam PPR repeat family 410 456 IPR002885 -
Vra5g1511 712 Pfam PPR repeat family 110 155 IPR002885 -
Vra5g1511 712 Pfam PPR repeat family 211 251 IPR002885 -
Vra5g1511 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 509 543 IPR002885 -
Vra5g1511 712 Pfam PPR repeat 585 608 IPR002885 -
Vra5g1511 712 Pfam PPR repeat 483 503 IPR002885 -
Vra5g1511 712 Pfam PPR repeat 512 541 IPR002885 -
Vra5g1511 712 Pfam PPR repeat 310 332 IPR002885 -
Vra5g1511 712 Pfam PPR repeat 280 302 IPR002885 -
Vra5g1511 712 Gene3D Tetratricopeptide repeat domain 506 708 IPR011990 GO:0005515
Vra5g1511 712 Gene3D Tetratricopeptide repeat domain 18 170 IPR011990 GO:0005515
Vra5g1511 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Vra5g1511 712 Pfam E motif 628 688 IPR046848 -
Vra5g1511 712 Gene3D Tetratricopeptide repeat domain 364 462 IPR011990 GO:0005515
Vra5g1511 712 Gene3D Tetratricopeptide repeat domain 173 266 IPR011990 GO:0005515
Vra5g1511 712 Gene3D Tetratricopeptide repeat domain 267 359 IPR011990 GO:0005515
Vra5g1511 712 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 303 707 - -
Vra5g1511 712 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 44 209 - -
Vra5g1511 712 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 204 301 - -
Vra5g1511 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1511 Vra-Chr5 21791691 21794076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1511 37 692 Glycoside Hydrolase AT3G49170 30.506 4.70e-103 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1511 - - gmx:100787089 1188.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1511 5 21791691 21794076 Vra5g1511 5 21791691 21794076 ECH