Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1476 ATGGGGATTTCCAAGACAAGCACTGAGGTTACCGACAATTCCAATTCCAATAGCAATAGCAATAGCAGCACTCAGACTGAAACTGACAACCACATCTCCATTCCTGCTCCCTACGCCGAAGGAGAGAAGCTATTGGTCAACCACTCTAATCATCTTTACATAGCCAAGGTTAGGAAAGTTGAGTACAACAACGCTGAAGGCTGGCAATTTCTCGTTCATTATGATGGTTGGAAGAAAAGTTGGGATGAATGGGTTGGAATGGATCGTTTGATGAAACCCACTGAGGAAAATATGCGCAAAAAACGTGCCCTTGATGAAAAGCACGGCATTGGCAAGAATCCGAAAGTCCCACGTGGTCCTCTGGCTAAATCCAAGAGTACTAACGTTTCAAGAGGCAGGAAGCGACGGAATGAACCTGTCATCAAGCCCAAAATTGCTCTTGATCCTGACAAGCTTGTCACCATTCAAATTCCTCCAACGCTGAAGAAACAATTACTTGATGATTGTGAGTTTATTAACCATCTCGGCAAGCTCGTTAAACTTCCTCGTTCTCCTAATGTGAAAGACATATTGAAAAATTATTTTGATTACAGATTGAAGAAATGTGGCTCGATGGCTGATTCAGTTGAAGAAATTATGAAAGGATTGTGTCGTTACTTTGATAAAGCACTTCCAGTGATGCTCTTGTACAAGACCGAGCGCCAACAGTACCAAGAAGCTTGTCCAGCCAACGTGTTTCCTTCTGCTATATATGGTGCTGAACATTTGTTACGCCTCTTTGTTAAGTTGCCCGAGCTATTGTTCCATGCTAGCATTGAAGAGGAGACGTTGACAGAGCTTCGGGCACAATTACTTGACTTTCTCAGGTTCTTGCAAAAAAACCACAGCACGTTTTTCCTTTCTACTTATCATGTTGCTGAAGATATTGAAATCAGCTCCGACAAAATAGGTGACTAG 957 0.4253 MGISKTSTEVTDNSNSNSNSNSSTQTETDNHISIPAPYAEGEKLLVNHSNHLYIAKVRKVEYNNAEGWQFLVHYDGWKKSWDEWVGMDRLMKPTEENMRKKRALDEKHGIGKNPKVPRGPLAKSKSTNVSRGRKRRNEPVIKPKIALDPDKLVTIQIPPTLKKQLLDDCEFINHLGKLVKLPRSPNVKDILKNYFDYRLKKCGSMADSVEEIMKGLCRYFDKALPVMLLYKTERQQYQEACPANVFPSAIYGAEHLLRLFVKLPELLFHASIEEETLTELRAQLLDFLRFLQKNHSTFFLSTYHVAEDIEISSDKIGD* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1476 318 PIRSF EAF3_MRG15 31 315 IPR008676 GO:0005634|GO:0006325|GO:0006355
Vra5g1476 318 Gene3D MRG domain 149 314 IPR038217 -
Vra5g1476 318 SUPERFAMILY Chromo domain-like 30 172 IPR016197 -
Vra5g1476 318 MobiDBLite consensus disorder prediction 1 31 - -
Vra5g1476 318 ProSiteProfiles MRG domain profile. 149 316 IPR026541 -
Vra5g1476 318 Pfam RNA binding activity-knot of a chromodomain 40 90 IPR025995 -
Vra5g1476 318 Pfam MRG 150 303 IPR026541 -
Vra5g1476 318 Gene3D - 18 116 - -
Vra5g1476 318 PANTHER CHROMATIN-BINDING PROTEIN 1 315 - -
Vra5g1476 318 PANTHER MORTALITY FACTOR 4-LIKE PROTEIN 1 315 IPR008676 GO:0005634|GO:0006325|GO:0006355
Vra5g1476 318 MobiDBLite consensus disorder prediction 103 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1476 Vra-Chr5 21419256 21424251 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1476 K11339 - gmx:100777259 495.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1476 5 21419256 21424251 Vra5g1476 5 21419256 21424251 ECH