Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1473 ATGATCTCAATCACATCCACTGAATTGAACTACTTAGTCTTCCGTTACCTTCACGAATCAGGTTTTACTCATTCTGCATTTGCATTCGGGTATGAAGCGGGGATTGATAGATGCAAAAATGATGATAATGTGGTTCCACCGGGTGCTCTTGTTACATTCATACAGAAAGGCATTCAATATCTTGAGCTGGAAGCTAACCTGAGTGGTAGTGATGCTGACATGGATGAGGATTTTTCGTTTCTACAACCTCTGGATCTTATCACAAAGGAGCCCAATGAGCTACACAATATAGTAAAAGCCAAAAAGGAAAATCTAAGTCAACATAAATCCGAATCGAATAAAATAGTGAATGGGTCGACTCACGACAACGCAAGGAGGGAACATGTTCAGGAAAGAGAGAAGGAGAGGAAAGAAAAGGAAAACGAGCAGAGACTGGAAAAAATAAGGTTAGAAAAAGAAAAGGAGCAACCAAAGGATGAATATAAAGAAACACAACATACCGATCAAAACCATACAGAGAAACACGAAGATAAGACTACTGTTGAAAATCTAAACAATAGAGCGTATGGAGGGCCTGAGCCAATGGAGATTTCACAGAGCCCCATGTCGTCGCCTAATGATACTCCATGTCGTGATGTAAAAATTTTGAAAGGCCATTCGTCGGAGGTATTTGCCTGTGCTTGGAATCCATCAGCTCCACTTCTTGCGTCTGGATCTGGAGATTCAACAGCTCGAATTTGGAAAATTGCTGATGGACCTTGTGACTCTGGTGTGCAAAATGAACCAGTAAATGTTGTCGTGCTGCAGCACTTTAAAGAAAGCACCAATGAAAAAAGCAAGGATGTGACTACACTCGATTGGAATGGAGACGGAACACTATTGGCAACTGGTTCCTATGATGGCCAAGCAAGAATATGGAGTAGAGATGGGGAGTTGAATAGTACACTAAACAAGCACAAAGGTCCAATATTTTCCTTGAAGTGGAACAAGAAGGGGGATTATCTTCTTAGTGGAAGTGTGGATAAGACTGCTATTGTGTGGAATATAAAGACTGGGGAATGGAAACAACTATTCGAATTTCACACTGGTCCAACTCTTGATGTTGATTGGCGAAACAATGTTACGTTTGCTACATGCTCCACTGATAAAATGATACATGTTTGCAAAATTGGGGAGAATAGACCAGTCAAAACTTTCTCAGGGCATCAGGATGAAGTTAATGCCATTAAATGGGATCCAACAGGTTCTTTACTGGCTTCATGCTCCGATGATCACACTGCAAAAATATGGAGTTTAAAGCAGGATAACTTTTTGCATGATTTGAAGGAACATGTCAAGGGGATCTATACAATTCGATGGAGCCCTACAGGCCCTGGTACCAACAATCCCAATCAGCAGTTAGTGCTAGCAAGTGCCTCATTTGACTCAACGATAAAGCTATGGGACGTGGAACTAGGGAGTGTACTCTACAGCTTAAGTGGTCACAGGGATCCTGTATATTCCGTTGCATTCAGTCCTAATGGGGAGTATCTGGCCAGTGGCTCCATGGATAGATTCGTGCATATATGGTCCGTGAAGGAAGGCAAGATTGTAAAAACATACACTGGAAAAGGTGGGATATTTGAAGTTAATTGGAGCAAAGATGGTGATAAAGTTGCTGCTTGTTTTTCAAACAATATAGTTTGTGTTTTGGATTTCCGAATGTAA 1707 0.4124 MISITSTELNYLVFRYLHESGFTHSAFAFGYEAGIDRCKNDDNVVPPGALVTFIQKGIQYLELEANLSGSDADMDEDFSFLQPLDLITKEPNELHNIVKAKKENLSQHKSESNKIVNGSTHDNARREHVQEREKERKEKENEQRLEKIRLEKEKEQPKDEYKETQHTDQNHTEKHEDKTTVENLNNRAYGGPEPMEISQSPMSSPNDTPCRDVKILKGHSSEVFACAWNPSAPLLASGSGDSTARIWKIADGPCDSGVQNEPVNVVVLQHFKESTNEKSKDVTTLDWNGDGTLLATGSYDGQARIWSRDGELNSTLNKHKGPIFSLKWNKKGDYLLSGSVDKTAIVWNIKTGEWKQLFEFHTGPTLDVDWRNNVTFATCSTDKMIHVCKIGENRPVKTFSGHQDEVNAIKWDPTGSLLASCSDDHTAKIWSLKQDNFLHDLKEHVKGIYTIRWSPTGPGTNNPNQQLVLASASFDSTIKLWDVELGSVLYSLSGHRDPVYSVAFSPNGEYLASGSMDRFVHIWSVKEGKIVKTYTGKGGIFEVNWSKDGDKVAACFSNNIVCVLDFRM* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1473 568 Gene3D - 204 568 IPR015943 GO:0005515
Vra5g1473 568 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 316 353 - -
Vra5g1473 568 ProSiteProfiles Trp-Asp (WD) repeats profile. 275 307 IPR001680 GO:0005515
Vra5g1473 568 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 399 433 - -
Vra5g1473 568 ProSitePatterns Trp-Asp (WD) repeats signature. 469 483 IPR019775 -
Vra5g1473 568 ProSiteProfiles Trp-Asp (WD) repeats profile. 316 357 IPR001680 GO:0005515
Vra5g1473 568 Gene3D - 2 91 - -
Vra5g1473 568 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 275 307 - -
Vra5g1473 568 ProSiteProfiles LIS1 homology (LisH) motif profile. 5 37 IPR006594 GO:0005515
Vra5g1473 568 MobiDBLite consensus disorder prediction 120 182 - -
Vra5g1473 568 MobiDBLite consensus disorder prediction 101 208 - -
Vra5g1473 568 SUPERFAMILY WD40 repeat-like 209 566 IPR036322 GO:0005515
Vra5g1473 568 ProSiteProfiles Trp-Asp (WD) repeats profile. 441 491 IPR001680 GO:0005515
Vra5g1473 568 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 216 249 - -
Vra5g1473 568 CDD WD40 213 524 - -
Vra5g1473 568 ProSitePatterns Trp-Asp (WD) repeats signature. 335 349 IPR019775 -
Vra5g1473 568 PANTHER WD40 REPEAT PROTEIN 4 568 IPR045183 GO:0003714|GO:0016575
Vra5g1473 568 ProSiteProfiles Trp-Asp (WD) repeats profile. 492 533 IPR001680 GO:0005515
Vra5g1473 568 ProSiteProfiles Trp-Asp (WD) repeats profile. 399 440 IPR001680 GO:0005515
Vra5g1473 568 Coils Coil 125 156 - -
Vra5g1473 568 Pfam LisH 8 33 IPR006594 GO:0005515
Vra5g1473 568 PANTHER F-BOX-LIKE/WD REPEAT-CONTAINING PROTEIN TBL1XR1 ISOFORM X1 4 568 - -
Vra5g1473 568 SMART WD40_4 264 307 IPR001680 GO:0005515
Vra5g1473 568 SMART WD40_4 527 565 IPR001680 GO:0005515
Vra5g1473 568 SMART WD40_4 309 348 IPR001680 GO:0005515
Vra5g1473 568 SMART WD40_4 209 248 IPR001680 GO:0005515
Vra5g1473 568 SMART WD40_4 485 524 IPR001680 GO:0005515
Vra5g1473 568 SMART WD40_4 351 389 IPR001680 GO:0005515
Vra5g1473 568 SMART WD40_4 392 431 IPR001680 GO:0005515
Vra5g1473 568 SMART WD40_4 434 482 IPR001680 GO:0005515
Vra5g1473 568 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 492 529 - -
Vra5g1473 568 SMART Lish 5 37 IPR006594 GO:0005515
Vra5g1473 568 PRINTS G protein beta WD-40 repeat signature 235 249 IPR020472 -
Vra5g1473 568 PRINTS G protein beta WD-40 repeat signature 469 483 IPR020472 -
Vra5g1473 568 PRINTS G protein beta WD-40 repeat signature 511 525 IPR020472 -
Vra5g1473 568 ProSiteProfiles Trp-Asp (WD) repeats profile. 216 249 IPR001680 GO:0005515
Vra5g1473 568 Pfam WD domain, G-beta repeat 312 348 IPR001680 GO:0005515
Vra5g1473 568 Pfam WD domain, G-beta repeat 213 248 IPR001680 GO:0005515
Vra5g1473 568 Pfam WD domain, G-beta repeat 437 482 IPR001680 GO:0005515
Vra5g1473 568 Pfam WD domain, G-beta repeat 394 431 IPR001680 GO:0005515
Vra5g1473 568 Pfam WD domain, G-beta repeat 279 307 IPR001680 GO:0005515
Vra5g1473 568 Pfam WD domain, G-beta repeat 487 524 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1473 Vra-Chr5 21390900 21397853 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1473 396 566 Miscellaneous Gene Families AT5G08390 31.792 6.71e-19 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1473 K04508 - gmx:100783690 1052.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1473 5 21390900 21397853 Vra5g1473 5 21390900 21397853 ECH