Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1468 ATGCGCACTGCACAATCTCAGCCTCACGGGTGGCAACATGCTTGGATGCTGCCTCCTCTCGCCATTTGGATTTCTGTTTCAGCAACACTCCGTTATGGGTATTACGGGGATTCCCTTATCTTGCTTGGTCCTGCCTCATCCCGTTTGATTACAACCAGTTCTGTTTTTGTGAAGCAGCTTCAAGTGTCAAGCAAGGACAAAAATCAAGTCTTTGTTCACACTTCCAATAAGAAGCCCGAGTTGAGCTCCCAAACTAATTGGACGGCGTCGGATTTTTTCCTTGTTGAAGCCTATAAAAGCAAGGGAATTTCTCTGTGGTTAAATCAGGGCTCCACCATCCGTCTTAGGTGGGAAGAACATACTACTACTGGATTGGATAAGCTACATGGGATGGTGGTTAAAGGAGACGTGAAGTTTGAACAACTACAGGATTCACATACGACCTTCCTCGATGCAATTTCTCTTCGAGAGACTGTTAATGGTAAAGAAGCTGAATACATGGTCGGGGAAGATGATAGATACCAAATTGGAGTTCTAAACATGAATGCAAAGAACATAATCTTGACTATGGAAGTTAATGTTTCAGCAAAGGTATATGATACCACCAAAGCCAAGAAGATGTGCTCCACTGAAAATGGACCTTGTAGAATCAGTTTTTTCTTCCCAGATACTCATTATGTTATTCTTACGGCAGCCAACAATGGAAATGGGGTAACGTATGTTGAAATTTCTTTAGTGGCCCGTGTGGTTGTCTACGTATTAATTCTAGGAGTTACTGCGATTGTTGTTTATCTGATTCTGAAAATCCTTGGAGTTTATGATGATGCTGAGCAGCATAGTCAAGTTACAATCGATGTTACATACAGAACAAGTAATGTGGTTGCAGCACAGGCCGAAACTGAGCCATTGATGCGAGTGGAGGAAAATCGAATGTCATATGGAACAAATGCAAAAGATGATAAACAAAATTCAGGAGCATATAGTAGCTCTTCATCAGAGGAGTTATATGATGAAAAATTATGTTGCATTTGTTATGATGAACAACGCAACAGCTTCTTTGTTCCTTGTGGACACTGTGCCACTTGCTATGACTGCGCACAGAGGATTGTCGATGAGGAGAGCAAAGTATGTCCTATATGCCGAAGGCTTATTCACAAAGTACGAAGATTGTTTCACATTTAG 1182 0.4154 MRTAQSQPHGWQHAWMLPPLAIWISVSATLRYGYYGDSLILLGPASSRLITTSSVFVKQLQVSSKDKNQVFVHTSNKKPELSSQTNWTASDFFLVEAYKSKGISLWLNQGSTIRLRWEEHTTTGLDKLHGMVVKGDVKFEQLQDSHTTFLDAISLRETVNGKEAEYMVGEDDRYQIGVLNMNAKNIILTMEVNVSAKVYDTTKAKKMCSTENGPCRISFFFPDTHYVILTAANNGNGVTYVEISLVARVVVYVLILGVTAIVVYLILKILGVYDDAEQHSQVTIDVTYRTSNVVAAQAETEPLMRVEENRMSYGTNAKDDKQNSGAYSSSSSEELYDEKLCCICYDEQRNSFFVPCGHCATCYDCAQRIVDEESKVCPICRRLIHKVRRLFHI* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1468 393 Pfam Domain of unknown function (DUF4792) 75 138 IPR032008 -
Vra5g1468 393 ProSiteProfiles Zinc finger RING-type profile. 341 381 IPR001841 -
Vra5g1468 393 PANTHER OS05G0521000 PROTEIN 12 392 IPR044586 GO:0004842
Vra5g1468 393 Pfam Domain of unknown function (DUF4793) 164 265 IPR032010 -
Vra5g1468 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 315 392 IPR013083 -
Vra5g1468 393 Pfam Zinc finger, C3HC4 type (RING finger) 338 387 - -
Vra5g1468 393 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 12 392 - -
Vra5g1468 393 SUPERFAMILY RING/U-box 332 387 - -
Vra5g1468 393 SMART ring_2 341 380 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1468 Vra-Chr5 21366446 21369203 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1468 - - gmx:100794488 588.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1468 5 21366446 21369203 Vra5g1468 5 21366446 21369203 ECH