Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1466 ATGATGTCGCATGGATCATCATCGTCTGCATTTAACAATGATCAGTCAGTGTCCTCGTCTTCTCAACAACCTGCGGGACTGTCTCGGTTTCTCTCGCAATCCCACAACCCTTCCCAAACCCTAGAAGATGCTTTTTCTCGTCTTTGTGTTTCTGCCTCTCCTTTCAACTACTCACATTCCGCCTCTCCTTTCAACTACCCACATTCTGATTTTGTTGCCGACAGTCCTTATGGTATCAATGCTTCTTCAAAGGTTCACCCTTACAACAGTTGGGCTGGTGGGAGTCCCACTCCTCAGACGGCCAATCTTTGGCACCCCACATTCACTTTTAATAATTATTCTAGTCATGCTGATGGGTGTCTTGATTCCAAACCATTGACGAGACAAATAGAAAATCCCACATTCAGTGGTGTTTATCCTGTTGTACCATTCTCCTCCAATGGGATGATGTCGCAGAAGACCTCTGACGACGGTTTCTTGAGTGGTGGTATTTTAGGTGGTAATGGTTTCAATATTCTGGGGTTTAGTTTTGATGAAAGGCGCCTCCGATGGTTCAACAATTTTCGAGAATGCGTTTTGACGTTGGCTACGGATCAACTTATGTGTAGGACTTTGCAGGAGACTTTGAAAACATTGACGAGAGAAGAGTTTGATATCATTTTCTTAGAGCTTATTAATCACGTGACTGATTTGATGGTTGACCCCTTTGGGAACTATGTTGTTCAGCGGATGATGGAACTTTGCAGCGAAGAGCAACGGACTCAGATAGTGTTGAGAGTGACTCAGTGTAATTTTCAGTTGGTCAGAATTTGCCTGAGTCCCCATGGAACCCGGGCTGTCGAGAAATTATTGGAGTATATAACCTCCCAGGAGCAACGAAATCGTATTATGTCAGCTCTTAGTCCCGGTGCCGCTGTATTGGCAAAGGATGTGAGTGGTCATAGGGTGATTCTGCATTGTCTAAAACAATTCCCTAGAGAAGACAATGAGAATCTTCTGAATGTGGTAGCAAACAAGTGCTTCGATATTGCAACAGATAAAACCGGATGTTGTGTGCTGCAGCCATGCATTAACCATGCACAAGGAGAAATGAAAAAGAAGCTGATAGCTTCTGTCATGTTTTACGCTTCACACTTGGCGGAAGACTGTTACGGCAACTATGTTGTGCAACATTTATTGTCTCTGGGAATACCAGGAGTTGCAGAATCTCTATGGAGACAGCTTGAAGGAAGATTCTTCTATCTGGCCTGTAACAAATATGGGAGTAATGTAGTGGAGAAGTTCTTTCAAGACTCGGTTGAACCTCATTCAACATATATTTCTCTGGAGTTGCTCAACAATCCAAATGTTGCAATGCTTCTAGTGGATCCATACGGGAATTATGTCATCAAATCAGCACTGACAGCATCTAGGGGTCATGTCCGGAATTCCTTGGAGCAACTGATCAAACAAAATTCCTTGATGATGCAGAGCAACCTCTTTGGCAAAAAGCTACTTGCTTGGTTTAACAAGGGAAGAATATAA 1524 0.4331 MMSHGSSSSAFNNDQSVSSSSQQPAGLSRFLSQSHNPSQTLEDAFSRLCVSASPFNYSHSASPFNYPHSDFVADSPYGINASSKVHPYNSWAGGSPTPQTANLWHPTFTFNNYSSHADGCLDSKPLTRQIENPTFSGVYPVVPFSSNGMMSQKTSDDGFLSGGILGGNGFNILGFSFDERRLRWFNNFRECVLTLATDQLMCRTLQETLKTLTREEFDIIFLELINHVTDLMVDPFGNYVVQRMMELCSEEQRTQIVLRVTQCNFQLVRICLSPHGTRAVEKLLEYITSQEQRNRIMSALSPGAAVLAKDVSGHRVILHCLKQFPREDNENLLNVVANKCFDIATDKTGCCVLQPCINHAQGEMKKKLIASVMFYASHLAEDCYGNYVVQHLLSLGIPGVAESLWRQLEGRFFYLACNKYGSNVVEKFFQDSVEPHSTYISLELLNNPNVAMLLVDPYGNYVIKSALTASRGHVRNSLEQLIKQNSLMMQSNLFGKKLLAWFNKGRI* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1466 507 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 165 506 IPR033133 GO:0003723
Vra5g1466 507 ProSiteProfiles Pumilio RNA-binding repeat profile. 443 483 IPR001313 GO:0003723
Vra5g1466 507 Pfam Pumilio-family RNA binding repeat 266 300 IPR001313 GO:0003723
Vra5g1466 507 Pfam Pumilio-family RNA binding repeat 339 371 IPR001313 GO:0003723
Vra5g1466 507 Pfam Pumilio-family RNA binding repeat 227 257 IPR001313 GO:0003723
Vra5g1466 507 Pfam Pumilio-family RNA binding repeat 307 336 IPR001313 GO:0003723
Vra5g1466 507 Pfam Pumilio-family RNA binding repeat 192 225 IPR001313 GO:0003723
Vra5g1466 507 Pfam Pumilio-family RNA binding repeat 449 467 IPR001313 GO:0003723
Vra5g1466 507 Pfam Pumilio-family RNA binding repeat 378 393 IPR001313 GO:0003723
Vra5g1466 507 Pfam Pumilio-family RNA binding repeat 412 440 IPR001313 GO:0003723
Vra5g1466 507 ProSiteProfiles Pumilio RNA-binding repeat profile. 262 298 IPR001313 GO:0003723
Vra5g1466 507 PANTHER PUMILIO HOMOLOG 15 118 501 - -
Vra5g1466 507 SUPERFAMILY ARM repeat 186 503 IPR016024 -
Vra5g1466 507 Gene3D - 179 506 IPR011989 -
Vra5g1466 507 MobiDBLite consensus disorder prediction 1 33 - -
Vra5g1466 507 CDD Pumilio 191 500 IPR033712 GO:0003723
Vra5g1466 507 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 118 501 - -
Vra5g1466 507 ProSiteProfiles Pumilio RNA-binding repeat profile. 334 370 IPR001313 GO:0003723
Vra5g1466 507 SMART pum_5 223 258 IPR001313 GO:0003723
Vra5g1466 507 SMART pum_5 187 222 IPR001313 GO:0003723
Vra5g1466 507 SMART pum_5 299 334 IPR001313 GO:0003723
Vra5g1466 507 SMART pum_5 445 480 IPR001313 GO:0003723
Vra5g1466 507 SMART pum_5 262 298 IPR001313 GO:0003723
Vra5g1466 507 SMART pum_5 335 370 IPR001313 GO:0003723
Vra5g1466 507 SMART pum_5 371 406 IPR001313 GO:0003723
Vra5g1466 507 SMART pum_5 407 443 IPR001313 GO:0003723
Vra5g1466 507 ProSiteProfiles Pumilio RNA-binding repeat profile. 407 442 IPR001313 GO:0003723
Vra5g1466 507 ProSiteProfiles Pumilio RNA-binding repeat profile. 223 259 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1466 Vra-Chr5 21342481 21345672 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1466 - - vun:114164555 939.488
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1466 5 21342481 21345672 Vra5g1466 5 21342481 21345672 ECH