Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1455 ATGTCGAATAGATCCGGTCAGGGTAGACAAGACAGCAATAACAAAGGTTTCACCAAAACCCATAACCACAACAATTTTCACCCTAAAAATCCCAATCCAACCCTCTCAACTTCTCTCAGACAAACCCAACCATCCATCCCCGCCACCACTAGCAGAGTCCCAGACAGAGGCCATAATGGGAATTTCGTTAAATACTTACCACAAGACGAGGCCGTGGCGGCGGGTCTTGGCGTCGAAGATGGAGCATTGGATCCTCTCGAATCTCAGAGAGTCGTAGATCTTTTGAACACACACTTGTCACGCTTGCTCAAGTGCAAACCTAAGCAATTCTGGACGCAAGTGGCTGCTGATGCCTCCCTACATGAGTTTTTGGACAGCTTCTTGCAATTTAGAAACAGGTGGTATGATTTTCCTCATCGCGGGGTGAAAGGGATTGTAGCAGGTGTTATTGTTGGCGAGAGGGATTTGAGTCGCCGCGTTTTCATGGTATTGTATCGCATTTCTTCGAATAAAGACCCTGGTGCTCGACCGGCCGATGCCCTCAGTTTGAGAGACCATGGAGTTCTTTTGCAGGAGAAAAAGTTGCTTGAATTGCCAAAGTTGTTGGATATATGTGCCATATACTATCATGAAAATGAAGAATTAACAAGATCACTGGTCAGAAATGCCTTCAGTGCTCAACCTTGGCTCCATAATAATCTGACTGCAGTAATATCCCATTTTCTAGGAATTGTCAGCACAATGCATGAACGTTGCAGTTCATCATTGGAGGTTTTATTTTCTTCTGGAAATCTCGATGACCACAATGCTGCTTTTCTTCAAGCTGATCTGCTGGAGGTGATGGACTTTATAAATGATGCAATTGTATCAATGGATTCTTTTGTTAGTGCATACGAACCAGCAGCTGTATTCTTTTCTTGTCCAGTTGAAATGAGTTATGGGAATGAGGAACTGCTGAGCCTCCTTGCCAGATTGCATGATTCACTAATTCCATCATTACAAAAGGGGTTCCGTATGATTTTTTCTGACAAACATGATGGCACGACATCTAATATCTTGGTTAGTCTGAAGATGTTAAAAATAAGATTGGTAAAGTTTGGTTGGCAACTATTGCACTTGTGCTATCTAAGTGATGAAGTGTTCAGAGATGACATCCCTCTTCCAGCTGCCACTAAGATGTTTCCTGCCAACGTAGAGGACCCAGTCATCAGAGCCGATATTCTTGTTCAAACAATTCGAGATATCAATTCAGTATCATCATTTTCTCGGGAAAGCCATCAGAAGGAAACATTTCTTCAAGATGTTGAAAGAAATTTTAATATACTGAGTGGGATTGAGAGATTAAAGGATAGTGGATGGATATTCATTGATAATGAACAGTTTCAATATTTATCCGGGATGATGAGTTCTGTGAAACAGATTTATAAGGACCCATATTCTGCAACGGCCCCTGTGCAAAACCAATCATTACTGACGGATGAAGATGCTGCAATTGCAGAGTCGAACATCAGTCAAATTAGGGACCTGTTCCCTGATTACGGTAAAGGATTTTTAGCTGCGTGTCTTGAGGTTTATGACCAGAATCCAGAAGAGGTTATTCAAAGAATTTTAGAGGGAACCCTTCATCAAGATCTGCAGAGCCTGGATACCTCGCTAGAGACATTACCACCAGCCAAGCCTACCACTGTGAGTGGGAATGATAAAGGAAAAGGTAAATTAATTGATTCTATGTCAGCATCCTCAAATCCAGAAGTCGTAAGTAGGAAGCAACAGACAGAGGGGTCATTGATGTCATCCTCTGCTTCACTAGGAAAATTTATAAGGAAATCTAGAGCTGATTTGCCTGATCTCAGTATTCTGGATAAAAAGGACGAGAAAGATACATCAAAAACTGCTGCTATGATTTTACAATATGAATATGAAGATGAGTATGACGACTCTTTTGATGACTTGGGTTTAAGTGTAGCAGACTCTGGATTAGAAGAAAATGAGATACTTGGTGACCAAATAAATGCAAAATCAGGGAAGTCGTGGGCAACAGAGAGTGGAAACTCGGTAAAAGATGTCCCTGATTCAAAATGGGGCTCAAGGAGAAAGCCACAGTACTATGTCAAGGATGGTAAGAATTACAGCTACAAAGTGGCTGGTGCGGTAGCAGTTGCAAATTCTGGTGAAGCTTCACTAGTAACGCAAGCTCAGAAGGAGTTAATACATGGCCTTGGACGAGGTGGAAACCTTCCTCTTGGAGCAGTAAAGAAGTTGACGGATTCCTACAAGGAGGATGATAACCAATCACAGGTTTCTGTAATGGAAGGCAATGGGATTCCGGGCAAATCTTTTGGTAGGGGTAGTAGGAAGGAAGGTGGAAGACAGATTGCATCTCATCAGCAGCAGCAGCAGCAGCAGCCTGTGCAACAATCTGGTGATTCTGAGGTGGATGGGAATAACCAAAGGGGTAGAGGAAGAGGGAGAGGGAGGGGCAGAGGAGGAGGAAGAAACAATCACCACCAGAAGGACCGATCCATGAAGAAGCATTTCTCTGGAATGAGCGGATTTTAA 2559 0.4287 MSNRSGQGRQDSNNKGFTKTHNHNNFHPKNPNPTLSTSLRQTQPSIPATTSRVPDRGHNGNFVKYLPQDEAVAAGLGVEDGALDPLESQRVVDLLNTHLSRLLKCKPKQFWTQVAADASLHEFLDSFLQFRNRWYDFPHRGVKGIVAGVIVGERDLSRRVFMVLYRISSNKDPGARPADALSLRDHGVLLQEKKLLELPKLLDICAIYYHENEELTRSLVRNAFSAQPWLHNNLTAVISHFLGIVSTMHERCSSSLEVLFSSGNLDDHNAAFLQADLLEVMDFINDAIVSMDSFVSAYEPAAVFFSCPVEMSYGNEELLSLLARLHDSLIPSLQKGFRMIFSDKHDGTTSNILVSLKMLKIRLVKFGWQLLHLCYLSDEVFRDDIPLPAATKMFPANVEDPVIRADILVQTIRDINSVSSFSRESHQKETFLQDVERNFNILSGIERLKDSGWIFIDNEQFQYLSGMMSSVKQIYKDPYSATAPVQNQSLLTDEDAAIAESNISQIRDLFPDYGKGFLAACLEVYDQNPEEVIQRILEGTLHQDLQSLDTSLETLPPAKPTTVSGNDKGKGKLIDSMSASSNPEVVSRKQQTEGSLMSSSASLGKFIRKSRADLPDLSILDKKDEKDTSKTAAMILQYEYEDEYDDSFDDLGLSVADSGLEENEILGDQINAKSGKSWATESGNSVKDVPDSKWGSRRKPQYYVKDGKNYSYKVAGAVAVANSGEASLVTQAQKELIHGLGRGGNLPLGAVKKLTDSYKEDDNQSQVSVMEGNGIPGKSFGRGSRKEGGRQIASHQQQQQQQPVQQSGDSEVDGNNQRGRGRGRGRGRGGGRNNHHQKDRSMKKHFSGMSGF* 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1455 852 Gene3D - 499 541 - -
Vra5g1455 852 MobiDBLite consensus disorder prediction 674 699 - -
Vra5g1455 852 CDD CUE_ASCC2 500 539 IPR041800 -
Vra5g1455 852 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 11 851 - -
Vra5g1455 852 Pfam CUE domain 500 540 IPR003892 GO:0043130
Vra5g1455 852 MobiDBLite consensus disorder prediction 552 595 - -
Vra5g1455 852 MobiDBLite consensus disorder prediction 674 689 - -
Vra5g1455 852 MobiDBLite consensus disorder prediction 575 595 - -
Vra5g1455 852 MobiDBLite consensus disorder prediction 1 56 - -
Vra5g1455 852 SUPERFAMILY UBA-like 499 555 IPR009060 GO:0005515
Vra5g1455 852 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100 11 851 - -
Vra5g1455 852 MobiDBLite consensus disorder prediction 790 814 - -
Vra5g1455 852 MobiDBLite consensus disorder prediction 821 842 - -
Vra5g1455 852 MobiDBLite consensus disorder prediction 757 852 - -
Vra5g1455 852 SMART cue_7 498 540 IPR003892 GO:0043130
Vra5g1455 852 ProSiteProfiles CUE domain profile. 498 541 IPR003892 GO:0043130
Vra5g1455 852 MobiDBLite consensus disorder prediction 1 61 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1455 K18667 - gmx:100778129 1365.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1455 5 21259180 21265506 Vra5g1455 5 21259180 21265506 ECH