Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1433 ATGTCATGGCTGGCTCGCTCCTTCGGAAATTCTCTCCGACTCGATGGCGACGGAGATCACGAAAACGACACCGTACTCGATCGACCTACCACGTCATTGAGAGACCCCCTGCAGCCGCAAGCACGAGAAAATGAATTCGGATCAGAATCAGAAGAAGAAGAAGACGAAGAAACGGAAGGGCGTGGAGTCAAAGAAGACCTCGACGAAATCAAGCAAACCCTGACTCGCCAATTTTGGGGAATGGCATCCTTCCTCACTCCGCCGTCAACGGATTCTCATTCTCATTCGCTTTCTCTTGCGCATACTCAATCCGATCCCTCTTCGTTTAACTCCGATCAATTCAAACATCGCTCTTTTTCTCCGAACGAAGAACCGCAATTGGACGAGGCTGCCGTTTCCAATCGCTCTAATTCGGTTTCGTTGGGATCTGATTCGGAAGGGGATTGCGGTCCAGAACAACGCGCTGTTGGAATCACGGAGGAGGTCTTGGCCTTCGCGATGAACATCGCTATGCATCCCGAGACGTGGTTGGATTTTCCTATTGATGAAGAAGACGACACCGACGATTTTGACATGTCTGATGCACAAAAAGAGCATGCAGCGGTTGTTGAAAGATTAACTCCTAGATTAGCTGCGCTCAGAATTGAACTATGTCCTTGCCATATGAGTGAAAGCTATTTCTGGAAAGTGTATTTTGTACTATTGCATTCAAGGCTTAACAAAGAAGATGCAGGGGTTTTGTCTACAACCCAGATCACGGCAGCCAGAGCAATGTGGATGCAGGAATTGCATAAACAAACAAAGCCTGACTTTGAAATTTTTGGAAGAAGTGCTTCCTACCCAAAAGACAACGCACGGTACAATGAATTAACTCCCAGCCTATTAGATGATGCTTATTCTGATGACATGCCTAATCAGACATATGGATATAGAACAACCTCTTTTTCGGCGAGGACAGATTATGAGACTGATAAATACATGGCTGAAACATCTGGAACGCATCTCACTGATAAGTCTGTTATTGAGGAAAAGTCAATTATTAAAACTGATAACAAGGATCCGAAATGTGGTCGACCATCTCAAATTATTATTAAGGATTATGAAGATGACGATGAGTGGCCAGAGGAAGATTCTGATTTAGGAGAATATGGTGGAACAACTCACCCCATAATAAATGAAGAAGACATATCCTTCAGCGATCTCGAAGATGATGATTATGGCATTAAACATGTTACTTTAAGTACAGGTGGTTTGAAATTGGTTTAA 1266 0.44 MSWLARSFGNSLRLDGDGDHENDTVLDRPTTSLRDPLQPQARENEFGSESEEEEDEETEGRGVKEDLDEIKQTLTRQFWGMASFLTPPSTDSHSHSLSLAHTQSDPSSFNSDQFKHRSFSPNEEPQLDEAAVSNRSNSVSLGSDSEGDCGPEQRAVGITEEVLAFAMNIAMHPETWLDFPIDEEDDTDDFDMSDAQKEHAAVVERLTPRLAALRIELCPCHMSESYFWKVYFVLLHSRLNKEDAGVLSTTQITAARAMWMQELHKQTKPDFEIFGRSASYPKDNARYNELTPSLLDDAYSDDMPNQTYGYRTTSFSARTDYETDKYMAETSGTHLTDKSVIEEKSIIKTDNKDPKCGRPSQIIIKDYEDDDEWPEEDSDLGEYGGTTHPIINEEDISFSDLEDDDYGIKHVTLSTGGLKLV* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1433 421 MobiDBLite consensus disorder prediction 1 67 - -
Vra5g1433 421 PANTHER BSD DOMAIN-CONTAINING PROTEIN 1 407 - -
Vra5g1433 421 MobiDBLite consensus disorder prediction 13 28 - -
Vra5g1433 421 ProSiteProfiles BSD domain profile. 187 239 IPR005607 -
Vra5g1433 421 SUPERFAMILY BSD domain-like 157 243 IPR035925 -
Vra5g1433 421 MobiDBLite consensus disorder prediction 87 152 - -
Vra5g1433 421 MobiDBLite consensus disorder prediction 87 116 - -
Vra5g1433 421 PANTHER BSD DOMAIN-CONTAINING PROTEIN 1 407 - -
Vra5g1433 421 Pfam BSD domain 187 243 IPR005607 -
Vra5g1433 421 MobiDBLite consensus disorder prediction 47 62 - -
Vra5g1433 421 MobiDBLite consensus disorder prediction 127 144 - -
Vra5g1433 421 Gene3D BSD domain 153 248 IPR035925 -
Vra5g1433 421 SMART wurzfinal6 187 239 IPR005607 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1433 Vra-Chr5 21058266 21062160 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1433 157 239 EF-hand Containing Proteins AT1G69030 31.183 3.85e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1433 - - gmx:100794286 650.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1433 5 21058266 21062160 Vra5g1433 5 21058266 21062160 ECH