Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1420 ATGGCATTCATGGTACAGAGCAGGCTGTATCTCTTATCTCTCTTCCCTCTTCCTCCTCCAATTTTTCCTTCTCAATCATTTTGCGTTTGGGATCCTAATTCCCTCACCATTGTAGCCAGCACAATGATTCGAAGCTCCTTTCCCAGTTTCAGGAGATTGCTTCTGCAGAATGTTTCGCCTTCTGCGTCCTCCAAGATGGGAAGGTACAATTGGTTTACTTCTCAGCCCTACCCTCTTGAGAGCCCAAACCCTACTTACAGTGACGAGGAGTATGCTGACGTGGATTGGGACAGCCTTGGATTTGGATTGATGGCTACTGATTATATGTATATTACTAAATGTTGTGAGGGCCAACATTTTGAAGAAGGCCAACTCAGTCGATATGGGAACATTGAACTCAGTCCAGCTGCCGGAGTCCTAAATTATGGTCAGGGATTATTCGAAGGCACAAAAGCATACAGAAAAGAAAATGGGCGCGTGCTACTCTTCCGTCCGGAACAAAATGCCATTAGAATGAAGATTGGTGCAGAAAGAATGTGCATGGCATCCCCTTCCATAGAACATTTCGTTCATGCTTTGAAACAAACTGTCTTGGCTAATAAACGTTGGATTCCTCCACCGGGAAAAGGGTCCTTGTACCTTAGGCCTCTGCTCTTAGGAACGGGTCCAGTTTTGGGTTTGGCTCCCGCACCAGAATACACATTCCTCATATACGCTTCCCCTGTTCGCAACTATTTCAAGGAGGGTTCGGCGCCGCTCAACTTGCACGTAGAGGAGAACTTTGACCGTGCTTCTCGCCGCGGCACTGGAAACGTTAAAACCATTTCCAATTATGCACCGGTTTTGATGGCACAAACTACAGCCAAGAAAAGAGGATTTTCAGACGTGTTGTACCTTGATTCAGCCACCAAGAAAAATCTGGAGGAGGTCTCTTCTTGTAACATTTTTATTGCCAAGGGAAAATGCATCGCTACTCCTGCTACCAATGGAACTATTCTTTCCGGAATTACCCGAAAAAGTGTCATTGAAATCGCGGGTGATCTTGGCTATCAGGTAGAAGAGCGTGCTGTTGGTGTGGATGAATTGATTGAGGCTGATGAAGTTTTCTGCACAGGAACTGCCGTAGGTGTTGCCCCTGTAGGGAGTATCACGTATCAGGATAAAAGGATGGAATATATAACGGGCTCTGGAACCATTTGTGAAGAGTTGAACGATACCATTTCAGGAATTCAAACTGGTACTATTGAAGATAAGAAGGGATGGATTATTGAAGTAGATTAA 1281 0.4512 MAFMVQSRLYLLSLFPLPPPIFPSQSFCVWDPNSLTIVASTMIRSSFPSFRRLLLQNVSPSASSKMGRYNWFTSQPYPLESPNPTYSDEEYADVDWDSLGFGLMATDYMYITKCCEGQHFEEGQLSRYGNIELSPAAGVLNYGQGLFEGTKAYRKENGRVLLFRPEQNAIRMKIGAERMCMASPSIEHFVHALKQTVLANKRWIPPPGKGSLYLRPLLLGTGPVLGLAPAPEYTFLIYASPVRNYFKEGSAPLNLHVEENFDRASRRGTGNVKTISNYAPVLMAQTTAKKRGFSDVLYLDSATKKNLEEVSSCNIFIAKGKCIATPATNGTILSGITRKSVIEIAGDLGYQVEERAVGVDELIEADEVFCTGTAVGVAPVGSITYQDKRMEYITGSGTICEELNDTISGIQTGTIEDKKGWIIEVD* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1420 426 Gene3D - 254 425 IPR043132 -
Vra5g1420 426 PANTHER AMINO ACID AMINOTRANSFERASE 51 426 IPR005786 GO:0004084|GO:0009081
Vra5g1420 426 Pfam Amino-transferase class IV 145 383 IPR001544 GO:0003824
Vra5g1420 426 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 85 422 IPR036038 GO:0003824
Vra5g1420 426 ProSitePatterns Aminotransferases class-IV signature. 309 338 IPR018300 GO:0003824
Vra5g1420 426 Gene3D - 75 253 IPR043131 -
Vra5g1420 426 CDD BCAT_beta_family 132 413 IPR033939 GO:0004084|GO:0009081
Vra5g1420 426 TIGRFAM ilvE_II: branched-chain amino acid aminotransferase 121 425 IPR005786 GO:0004084|GO:0009081
Vra5g1420 426 PANTHER BRANCHED-CHAIN-AMINO-ACID AMINOTRANSFERASE 51 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1420 Vra-Chr5 20903693 20911505 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1420 K00826 - gmx:100782644 665.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1420 5 20903693 20911505 Vra5g1420 5 20903693 20911505 ECH