Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1417 ATGGGAGACTTAACCATAATCAATGAAGGAAACCAATCTCAGAAAATGGAGGGAAACGTATTTGGTCCTAGTGGGAGCGATGCCACTAATATTTTAATAAACCATGACTTTTCTGATGGGCTAAACGCCTGGCATCCCAATTACTGTCATGGCTATGTAGTTTCATCCGAATCAGGCTCTCGAGAAGCAATGACAGTAGGATTAGATGGTAATTACGCTGTGATCACAGACCGTAGGCAATGCTGGCAGGGTTTAGAGCAAGATATCACAGACAAAATTTCTGTTGGTTCCACTTACATGGTTTCAGCTTTTGTTGGAGTACATGGGCCTTCTCCTTATTCTACTCATGTTAAAGCTACTCTGAAACTAGAACGTCACGGTTCAGACCCTGGCTACTTGGAGATTGGAGGAACTTCTTGCACGGGGGGCAGCTGGAAAAAGTTAGAAGGGTCGTTTTCGTTGTCAACTATGCCTGATCGAGTTATATTTTATTTGGAAGGACCTTCTCCTGAATTTGATCTGCTTATAAGATCAGTGAACATCCATGAACTTAAATTCGACGATGAAAACATCATAATAAATCCCCAGTTTGATGATGGCCTGAATAATTGGACTGGAAGAGGCTGCAAGATTGCCTTACATGACTCCATGGGAGATGGGAAGATTCTTCCGAAGTCTGGTAAATTCTTTGCATCTGCAACAGAACGTACCCAAAGCTGGAACGGAATTCAGCAGGAGATCACAGGAAGAGTGAAGCGCAAGCTTGCCTATGAGGTTACTGCATTAGTTCGGATATTTGGGAACAGTGTCACCACTTCTGATGTAAGGGCTACTTTGTGGGTTCAAGCACCAGATCTTCGCGAGCAGTATATAGGCATTGCCAATGTGCAGGCAACAGATAAAGATTGGGTCCAAATGCAAGGAAAATTCCTCCTAAATGGTTCCCCATCAAAAGTAGTAGTTTATTTAGAAGGTCCTCCTGCGGGCACTGACATTCTTGTCAATNCTTTGGTTATAAAACATGCAGCTAAAACACCACCTTCAACACCACCAGATTGTGAGATTGCTGCTTTTGGTGTTAACATAATTGAAAACAGTAATCTGGGTGATGGCACCAATGGATGGTTTCCACTTGGGAGTTGTACTTTGAGCGTTGGGAGTGGTTCACCGCGTATAATTCCACCAATGGCAAGAGACTCTCTTGGGCCTCATGAATCCTTGAGCGGGCGCTACCTCCTTATAACCAATCGCACACAAACATGGATGGGTCCTGCTCAGATGATCACTGAGAAATTGAAACTCTTTCTAACTTATCAAGTATCTGCTTGGGTCAGGGTCGCTTCCGGACCAACTGGGCCTCAGATTGTTAATGTTGTCCTTAGCGTTGATGATCAGTGGGTCAATGGAGGTCAAGTTGAGATTGCCGATGGCAGGTGGCACGAAATTGGTGGGTCTTTTAGAATTGAAAAGCAGGCATCTAAGGTTATGGTTTATATTCAAGGACCTTCTTCTGGTGTTGATTTAATGATTGCTGGACTTCAAATTTTCGCTGTTGATAGACAAGCAAGGTTTAAGTATTTGAGGAGGCAGACAGAAAAGATCCGTAAGCGTGATATTACTCTAAAATTCTCTGGGCTGGATTCAATTGGAAATCTTGGAACCTTGGTGAGAGTCAGACAAATACAAAATGATTTTCCCATGGGAACGTGCATTAGTAGAAGCAANATTGACAATGAAGATTTTGTNGACTTNTTTGTGAAACATTTTAACTGGGCAGTTTTTGGTAATGAGTTGAAGTGGTNCTGGACTGANCNACAACAAGGGAANCTNNATTACANGGATGCTGATGAAATGCTAGACTTATGCCAGAAAAACAAGATAGACACTCGGGGCCATTGTATNTTCTGGGAAGTAGANGGCACTGTTCAGCAATGGNTCAAATCACTGAATAAAACTGATTTGANGAAAGCTGTCCAAAATCGCCTGAATGACTTATTNACTCGCTACAAGGGTAANTTCAGACACTATGATGTCAACAACGAAATGTTNCACGGTTCGTTTTATCANGACAAACTAGGTAAGGATATAAGGGCAAACATGTTCAAGACAGCACACCAACTGGATCCATCTGCNACNCTTTTTGTNAATGACTATCATGTTGAAGANGGATGTGACACCAGATCATCCCCAGAAAAGTACATTCAACATATTCTTGATTTNCAACAGCAAGGTGCCCCAGTTGGGGGAATAGGAATTCAAGGTCACATAGATAGTCCTGTGGGGCCTATTGTTTGTTCNGCCCTTGATAAATTGGGCACTCTTGGTATACCAATCTGGTTTACNGAGCTTGATGTGTCTTCNACCAANGAATATGTCAGAGCTGATGATCTNGAAGTTATGCTGCGGGAAGCTATGNCACACCCTGCCATAGATGGTGTAATGCTCTGGGGATTTTGGGAGTTATTTATGAGCCGGGAAAATTCACACCTGGTGAATGCGGAAGGAGAACTGAACGAAGCTGGGAAAAGATTCCTTTCTCTCAAACAAGAGTGGTTATCTCACAGCCATGGTTATGCTGATGCGCAAGGGCAATTCAGCTTCAGAGGCTTCAGTGGAACATACAACGTCGAAGTTGTCACCTTAGCAAAGAAANTTTCTAAGACATTCGTTGTTGACAAGGGTGACTCCTCAGTGCTGGTATCAATCGATTTATAA 2715 0.4236 MGDLTIINEGNQSQKMEGNVFGPSGSDATNILINHDFSDGLNAWHPNYCHGYVVSSESGSREAMTVGLDGNYAVITDRRQCWQGLEQDITDKISVGSTYMVSAFVGVHGPSPYSTHVKATLKLERHGSDPGYLEIGGTSCTGGSWKKLEGSFSLSTMPDRVIFYLEGPSPEFDLLIRSVNIHELKFDDENIIINPQFDDGLNNWTGRGCKIALHDSMGDGKILPKSGKFFASATERTQSWNGIQQEITGRVKRKLAYEVTALVRIFGNSVTTSDVRATLWVQAPDLREQYIGIANVQATDKDWVQMQGKFLLNGSPSKVVVYLEGPPAGTDILVNXLVIKHAAKTPPSTPPDCEIAAFGVNIIENSNLGDGTNGWFPLGSCTLSVGSGSPRIIPPMARDSLGPHESLSGRYLLITNRTQTWMGPAQMITEKLKLFLTYQVSAWVRVASGPTGPQIVNVVLSVDDQWVNGGQVEIADGRWHEIGGSFRIEKQASKVMVYIQGPSSGVDLMIAGLQIFAVDRQARFKYLRRQTEKIRKRDITLKFSGLDSIGNLGTLVRVRQIQNDFPMGTCISRSXIDNEDFVDXFVKHFNWAVFGNELKWXWTXXQQGXLXYXDADEMLDLCQKNKIDTRGHCXFWEVXGTVQQWXKSLNKTDLXKAVQNRLNDLXTRYKGXFRHYDVNNEMXHGSFYXDKLGKDIRANMFKTAHQLDPSATLFVNDYHVEXGCDTRSSPEKYIQHILDXQQQGAPVGGIGIQGHIDSPVGPIVCSALDKLGTLGIPIWFTELDVSSTXEYVRADDLEVMLREAMXHPAIDGVMLWGFWELFMSRENSHLVNAEGELNEAGKRFLSLKQEWLSHSHGYADAQGQFSFRGFSGTYNVEVVTLAKKXSKTFVVDKGDSSVLVSIDL* 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1417 904 Gene3D - 187 342 - -
Vra5g1417 904 Gene3D - 355 517 - -
Vra5g1417 904 Gene3D - 24 186 - -
Vra5g1417 904 Pfam Glycosyl hydrolase family 10 561 818 IPR001000 GO:0004553|GO:0005975
Vra5g1417 904 ProSitePatterns Glycosyl hydrolases family 10 (GH10) active site. 775 785 IPR031158 -
Vra5g1417 904 SUPERFAMILY Galactose-binding domain-like 359 519 IPR008979 -
Vra5g1417 904 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 552 847 IPR001000 GO:0004553|GO:0005975
Vra5g1417 904 SUPERFAMILY Galactose-binding domain-like 29 183 IPR008979 -
Vra5g1417 904 SMART glyco_10 598 848 IPR001000 GO:0004553|GO:0005975
Vra5g1417 904 Gene3D Glycosidases 554 846 - -
Vra5g1417 904 SUPERFAMILY Galactose-binding domain-like 188 342 IPR008979 -
Vra5g1417 904 SUPERFAMILY (Trans)glycosidases 555 855 IPR017853 -
Vra5g1417 904 Pfam Carbohydrate binding domain 361 504 IPR003305 GO:0016798
Vra5g1417 904 Pfam Carbohydrate binding domain 30 169 IPR003305 GO:0016798
Vra5g1417 904 Pfam Carbohydrate binding domain 190 327 IPR003305 GO:0016798
Vra5g1417 904 PANTHER ENDO-1,4-BETA-XYLANASE A-LIKE PROTEIN 21 181 - -
Vra5g1417 904 PANTHER ENDO-1,4-BETA-XYLANASE A-LIKE PROTEIN 186 904 - -
Vra5g1417 904 Coils Coil 830 850 - -
Vra5g1417 904 PANTHER GLYCOSYL HYDROLASE 21 181 IPR044846 GO:0004553|GO:0005975
Vra5g1417 904 PANTHER GLYCOSYL HYDROLASE 186 904 IPR044846 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1417 Vra-Chr5 20876711 20888553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1417 8 904 Glycoside Hydrolase AT1G58370 66.410 0.0 1259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1417 - - lja:Lj0g3v0316669.1 1410.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1417 5 20876711 20888553 Vra5g1417 5 20876711 20888553 ECH