Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1413 ATGAGGAGAGGGAAGGATGATGAGAAGGTGATGGGGCCAATGTTCCCTAGGCTACATGTCAATGATACAGAAAAGGGAGGACCAAGAGCACCACCTAGGAATAAGATGGCCCTCTATGAGCGGTTTAGTATTCCCTCTCAAAGGTTCAATTCAGGTGTTCTGCCACTCAACCAAAATATTTCCAGTAATACTGCTCCCCCTACATCCTCAAGTCAGGGGACTGTCCCTGAGAGAAATCATGTCTTTCCTGTTCATATGCCATCGCAGAAACCTATTCGTCCCGTAGAAAAATGTCACTCTCGCCAATCGGAAGAGGCAAATTTGACTTGTTCTCTTGAACAGAGAAAGAAGGTATATGAAGAAGACTTTAGGGTTCCTGTATACGTTCATTCAAGGGTTGGTCAGTGTAATGATAAAAGTGTTGAGAGTTTCGACAGGAAAAAGATCACTCATACAGGCACTAGGTATTTCGGTTGTTCAGTTGCAGGGCAAAGTGATTGTGAAAGGGTTCCCAAACAATTTGGGTCCTCACATGTTAGGAAAGATGCGCGATGTGAGACTGATGGTCTTCCACAAGTAAGTACAAGTAAAGACCAGCCATTAACGTCTGTCCGAAGCATATCAACGAGAGAAAATATTGACACCTTAGTAAGGCAAGCCAAGGTGACTCCGAATCAAGAGTTTCAAGATTGTCATGTATCAAAAAGGAACAGGTTTAGACAGGATGATGCTTGCTTACGGCAGGACTGTGGAGTGGGGTCCCAATCCAATGACATTGGACACAGTGGTTCTCTTGTTCAGTCTTCAAGGAAGATTGGTAATGGAAATGCCGCTACAGCAAACAAAACCAATCCAGCTGAGGCAATCAATGACACTGGACATCATGATACCGGGACGGGCAGTCTGATACAGGGGGGAAAATTAAATGGAAGTGACAATGCTTCAAAGATCTCCCCGGTAGACAATTTGTCACCAGTGAACATTTCTCCAGATGATGTTGTTGGAATAATAGGTCAAAAGCAATTCTGGAAAGCTAGAAGAGCAATTGCCCACCAACAGAGAGTGTTTGCTGTCCAAGTGTTTGAGCTTCACAGATTGATAAAGGTCCAACAACTGATGGCTGGATCACCCGAGGTTTTGCTTGAAGATGGCACTTTTCTGGGAAAGTCTATTCCAAAGGGATCTACTCGGAAGAAACTTTCACTGGAATATGTTGTAAAACCTTGGCAACAAACCCTTAAGCGCAAAGATGATTCTGAAAAGTTAAATCATAAAATGGAATGTTCTGCGGAGAACGCAGTTGGCAAGACGTCTCTCTCATCAGTGAAAAACGATAGCCACCTTTCAAACTACACTCCTTTTCCAAGAAATCCTCAACAGGCAAATGTGGCTGCTGACAGTGGAATGGGCCCTTGGTGTTTCCAGCAGTCAGCCGGGCACCAATGGTTAGTTCCTGTTATGACTCCTTACGACGGGCTTGTCTACAAGCCATATCCTAGGCCTGGATTCACAGGAACAGATGGTGGAGGATGTGGGCCTGCTCCTTTTGGTGGTAATTTTATGAATCCAGCCTATGGAATCCCAACTTCTCATCAAGGAGTTGGGGTTTCACCACAAACACCTCCAGGAAGTCTTGCTTACTTCCCTCCATATGGGATGACAGTTATGAATGCAACAATGTCAGAGTCAGCTGTTGATCAGGTGAACCAGTTCTCTTCACTAGGTTCTCACAGGTATAATGGCCATTTACCTGGAGGGGAATCTAATCATATCACAAACAATCAAAGCTCTCGTAATTTACCAACTCCGAGAAATGGAGCATCGTCACATGTCCTGAAATATCAGACATCTAAGGATTTTGAGTTGCAGGGTAGTACAGCAAGTAGTCCTGATGAAATGGCACAGGCATTAAGCACAGGGCAAGTTGCAGAAGGAAGGGATGTTCTTCCTCTTTTCCCTATGGTTCCGGCAGAACCTGAGTCTATTCCTCGCTCTCTTGAAACCGGACAACCAACTCGAGTAATCAAAGTCGTGCCGCACAACCGAATATCAGCAACTGCTTCAGCAGCTAGAATTTTTCAATCAATTCAGGAAGAGAGAAAACAGTATGACTCAGTCTAG 2121 0.4455 MRRGKDDEKVMGPMFPRLHVNDTEKGGPRAPPRNKMALYERFSIPSQRFNSGVLPLNQNISSNTAPPTSSSQGTVPERNHVFPVHMPSQKPIRPVEKCHSRQSEEANLTCSLEQRKKVYEEDFRVPVYVHSRVGQCNDKSVESFDRKKITHTGTRYFGCSVAGQSDCERVPKQFGSSHVRKDARCETDGLPQVSTSKDQPLTSVRSISTRENIDTLVRQAKVTPNQEFQDCHVSKRNRFRQDDACLRQDCGVGSQSNDIGHSGSLVQSSRKIGNGNAATANKTNPAEAINDTGHHDTGTGSLIQGGKLNGSDNASKISPVDNLSPVNISPDDVVGIIGQKQFWKARRAIAHQQRVFAVQVFELHRLIKVQQLMAGSPEVLLEDGTFLGKSIPKGSTRKKLSLEYVVKPWQQTLKRKDDSEKLNHKMECSAENAVGKTSLSSVKNDSHLSNYTPFPRNPQQANVAADSGMGPWCFQQSAGHQWLVPVMTPYDGLVYKPYPRPGFTGTDGGGCGPAPFGGNFMNPAYGIPTSHQGVGVSPQTPPGSLAYFPPYGMTVMNATMSESAVDQVNQFSSLGSHRYNGHLPGGESNHITNNQSSRNLPTPRNGASSHVLKYQTSKDFELQGSTASSPDEMAQALSTGQVAEGRDVLPLFPMVPAEPESIPRSLETGQPTRVIKVVPHNRISATASAARIFQSIQEERKQYDSV* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1413 706 MobiDBLite consensus disorder prediction 586 609 - -
Vra5g1413 706 PANTHER PROTEIN EARLY FLOWERING 3 1 706 IPR039319 GO:2000028
Vra5g1413 706 MobiDBLite consensus disorder prediction 575 609 - -
Vra5g1413 706 MobiDBLite consensus disorder prediction 293 323 - -
Vra5g1413 706 MobiDBLite consensus disorder prediction 54 77 - -
Vra5g1413 706 MobiDBLite consensus disorder prediction 1 33 - -
Vra5g1413 706 MobiDBLite consensus disorder prediction 54 79 - -
Vra5g1413 706 MobiDBLite consensus disorder prediction 257 277 - -
Vra5g1413 706 PANTHER FLOWERING PROTEIN, PUTATIVE-RELATED 1 706 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1413 Vra-Chr5 20836553 20841498 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1413 K12125 - gmx:100793561 1074.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1413 5 20836553 20841498 Vra5g1413 5 20836553 20841498 ECH
Vra5g1413 5 20836553 20841498 Vra6g1761 6 33808389 33812956 ECH