Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1404 ATGGCGGACGAAACTCACTATTCATCTCCCAAAGACTCTGCGCCCCTCAAACGCAAGTACGAAGACCAATCCTCCGACAGGCCCACTGGCTTCTCGGCAGGTCCCGCCACCGGCATCGAGCTCGCCAAGCAGCGTGCTCAAGAAGTTGCCGCCCGCCTCCTCAGCGTTGCTCCTCCTCCCCCGCTCGACGCCAAGCGTCCCAAATCCGATAACGGTGCTCCTACCTCCGGCTTCGATTCTTATGATGCGAAGCCTCAGTACTCTGCTGTTCCTCCAGTCTCCTACAGTCACCAAGGAACGAGCAAGAAGATTGATATCCCTAACGGCCGGGTTGGTGTGATTATTGGCAAAAGTGGAGAGACCATTAAATATCTTCAGTTGCAGTCTGGTGCCAAAATTCAAGTTACTCGCGATATGGACGCCGACCCTAATTCTGCTACCAGGACCGTTGAGCTTATGGGCACTCCCGAGGCAATTGCCTCTGCAGAGAAACTCATTAATGAAGTTCTTGCCGAGGCTGAATCTGGAGGCTCTGGCATTGTTGCTCGAAGACTAACCGGACAAGCTGGGTCAGATGAATTTGTTATGAGAATCCCAAATAATAAGGTTGGCCTTATTATTGGAAAAGGTGGAGAAACCATAAAGAATATGCAAGCTTCTACTGGCGCACGGATTCAGGTCATACCTCTGCATCTTCCTCCGGGTGACACATCAACTGAAAGAACTTTAAAGATTGATGGGACACCTGAGCAAATTGAGTCTGCAAAGGAGTTGGTTAATCAAATCATCAGCGGCGAGAATCGACTTAGAAATCCTTCAATGTCTGGTGGGTATCCTCAGCAAGGCTACCAATCTCGACCACCCTCTAACTGGGGTCCCCCCGCACCAATGCAGCAACCTGGTTATGGCTATGTTCAACCTGGAGCATATTCTGGTCCATCACCTCAATATAACATGCCTCAGCCACCATATTCAGGCTATCCTCCCCAACAACCAGGTGGATATTCCACCAATTGGGACCAGTCTTCTGCACCACCTCACCAACAGTCTACTCATGCTGGTGGCTATGATTACTATAGTCAACAACCACAACCGCAAAATCCTGGAGGTCCTGCACCTCCAGCTGACGGCTCTGCATACAATTATAGTCAACCACCTTCATCTGCTTATAGCCAACCGGGACAGGGTTATGCTCAGGACAGCTATAATGCATATAATGCACAATCTCATTCGGGGTATGGACAACCACCAACGTATGATCAGCAACAAGGCTATGGCTCCGTTACTGGCTATGGTAGTGGGAATAACCAAGCACAAGAGGGCCACACTTCGGGCTATGCATCGCAGGGAGATTCAGCCCCAGCTCCATCAACCCAACCGACCACCATTGCACAGCAAGGTTATCCTACCAGCCAACAGCCCAGCTCAAACACTTCCAACTACCCACCTCAGGGAACTCCTCAGTCGGGTTATGGCGTCCCCCCTACATCCCAAGCTGCTTATGGAAGTCAACCACAACCAGGTTATGGTCCTGGTTATGGAGCCCCTCAATCTCAGAAACCAAGTGGCAATCCTTCTGTTTATGGACAGTCGCAGTCACCTAGTGCAGTAGGAGGCTATGGTCAGTCAGCATATCCTGCGCAGCCTCCACCTTCTGGTTATACTCAACCCCAAGCAGAAACTGGTGCTCAGAGAGCACCTCCGTCGGGCTATGGTGCAGGGCAACCAGGTTATGGTTCTCAAGCATATGGTGCACCTCAGGGAGGCCAGCCTGCTTATGGACAGGCGCCGCCTCCATACACCAACAGTTCTTATGGTGCTGGTTATACTCAGGCTCCGGCCTATACTGGCGATGGTAATGGCAGTGGGAATACTCAGCCTCCCCAAACAACTGCTGCTAAAACTTCGCCCCAGACTTGA 1920 0.5141 MADETHYSSPKDSAPLKRKYEDQSSDRPTGFSAGPATGIELAKQRAQEVAARLLSVAPPPPLDAKRPKSDNGAPTSGFDSYDAKPQYSAVPPVSYSHQGTSKKIDIPNGRVGVIIGKSGETIKYLQLQSGAKIQVTRDMDADPNSATRTVELMGTPEAIASAEKLINEVLAEAESGGSGIVARRLTGQAGSDEFVMRIPNNKVGLIIGKGGETIKNMQASTGARIQVIPLHLPPGDTSTERTLKIDGTPEQIESAKELVNQIISGENRLRNPSMSGGYPQQGYQSRPPSNWGPPAPMQQPGYGYVQPGAYSGPSPQYNMPQPPYSGYPPQQPGGYSTNWDQSSAPPHQQSTHAGGYDYYSQQPQPQNPGGPAPPADGSAYNYSQPPSSAYSQPGQGYAQDSYNAYNAQSHSGYGQPPTYDQQQGYGSVTGYGSGNNQAQEGHTSGYASQGDSAPAPSTQPTTIAQQGYPTSQQPSSNTSNYPPQGTPQSGYGVPPTSQAAYGSQPQPGYGPGYGAPQSQKPSGNPSVYGQSQSPSAVGGYGQSAYPAQPPPSGYTQPQAETGAQRAPPSGYGAGQPGYGSQAYGAPQGGQPAYGQAPPPYTNSSYGAGYTQAPAYTGDGNGSGNTQPPQTTAAKTSPQT* 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1404 639 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 101 177 IPR036612 GO:0003723
Vra5g1404 639 Pfam KH domain 195 260 IPR004088 GO:0003723
Vra5g1404 639 Pfam KH domain 103 168 IPR004088 GO:0003723
Vra5g1404 639 MobiDBLite consensus disorder prediction 1 25 - -
Vra5g1404 639 SMART kh_6 190 264 IPR004087 GO:0003676
Vra5g1404 639 SMART kh_6 98 171 IPR004087 GO:0003676
Vra5g1404 639 MobiDBLite consensus disorder prediction 1 101 - -
Vra5g1404 639 ProSiteProfiles Type-1 KH domain profile. 99 166 - -
Vra5g1404 639 CDD KH-I 193 259 - -
Vra5g1404 639 MobiDBLite consensus disorder prediction 596 639 - -
Vra5g1404 639 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 194 298 IPR036612 GO:0003723
Vra5g1404 639 MobiDBLite consensus disorder prediction 267 288 - -
Vra5g1404 639 MobiDBLite consensus disorder prediction 330 365 - -
Vra5g1404 639 ProSiteProfiles Type-1 KH domain profile. 191 259 - -
Vra5g1404 639 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 50 626 - -
Vra5g1404 639 MobiDBLite consensus disorder prediction 380 504 - -
Vra5g1404 639 CDD KH-I 101 166 - -
Vra5g1404 639 MobiDBLite consensus disorder prediction 267 639 - -
Vra5g1404 639 MobiDBLite consensus disorder prediction 517 539 - -
Vra5g1404 639 Gene3D K Homology domain, type 1 188 290 IPR036612 GO:0003723
Vra5g1404 639 Gene3D K Homology domain, type 1 94 187 IPR036612 GO:0003723
Vra5g1404 639 PANTHER K DOMAIN-CONTAINING PROTEIN-RELATED 50 626 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1404 Vra-Chr5 20767833 20773089 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1404 K13210 - gmx:100797476 837.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1404 5 20767833 20773089 Vra5g1404 5 20767833 20773089 ECH