Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1385 ATGGATTCTTCGCAAGGGTCTACCATTGCTGGTTTCGTGGATAATGCATCCATTCAGAGGAAACAGTCTAGTTTTGATGGCGTTCCTGTGTATGTCAAGGAGCTAATTGCCGGAGGCTTTGCTGGTGCGCTTTCTAAGACCGCTGTTGCACCTCTCGAACGAGTCAAGATACTTTGGCAGACAAGGACACCTGGATTTCATTCTCTTGGGGTGTATCAATCTTTGAATAAATTAGTCAAGAGGGAAGGTTTTCAAGGATTATATAAGGGAAACGGAGCTGGTGTTATTCGCATTGTTCCATATGCAGCCTTGCATTTTATGACATATGAGCGCTACAAAAGTTGGATCTTGAATAATTATCCAATGTTAGGTTCGGGTCCTTGTATTGATCTTTTAGCAGGCTCTGCTGCAGGGGGAACTTCAGTTTTATGTACCTACCCGTTGGATCTTGCTCGTACCAAACTTGCTTACCAGGTGGTGGACACAAGAGGAGGTATCAAAGATGATGGTATGAGAGGAGTTCAACGTACAAATAATGGCATTAAAGGTGTGCTTACAAGTGTCTATAAGGAAGGCGGAGCCCGTGGACTTTACAGGGGTGCAGGACCAACCCTTACTGGAATTCTTCCATATGCTGGTTTAAAGTTCTACATGTATGAAAAACTGAAGACTTACGTTCCAGAAGAACATCAAAAGTCCATTGTGATGCGTCTTTCTTGTGGAGCTCTAGCTGGATTGTTTGGGCAGACTTTAACATACCCTTTAGATGTTGTCAAGAGACAGATGCAGGTTGGCAGTCTGCAGAACGCTACTCATGAGAATGTCAGATATAAAAATACCATTGATGGACTTAGGACGATTGTTCGTAATCAAGGATGGAGGCAGCTCTTTCATGGCGTAAGCATTAACTATATAAGGATTGTTCCTTCAGCTGCAATTAGTTTCACCACATACGACATGATGAAGTCTTGGCTTGGCATACCACCTCAACAGCAAAAGTCTCGATCAGTTTCGGCAGCTTGA 1023 0.434 MDSSQGSTIAGFVDNASIQRKQSSFDGVPVYVKELIAGGFAGALSKTAVAPLERVKILWQTRTPGFHSLGVYQSLNKLVKREGFQGLYKGNGAGVIRIVPYAALHFMTYERYKSWILNNYPMLGSGPCIDLLAGSAAGGTSVLCTYPLDLARTKLAYQVVDTRGGIKDDGMRGVQRTNNGIKGVLTSVYKEGGARGLYRGAGPTLTGILPYAGLKFYMYEKLKTYVPEEHQKSIVMRLSCGALAGLFGQTLTYPLDVVKRQMQVGSLQNATHENVRYKNTIDGLRTIVRNQGWRQLFHGVSINYIRIVPSAAISFTTYDMMKSWLGIPPQQQKSRSVSAA* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1385 340 Gene3D Mitochondrial carrier domain 29 326 IPR023395 -
Vra5g1385 340 PANTHER SOLUTE CARRIER FAMILY 25 13 333 - -
Vra5g1385 340 Pfam Mitochondrial carrier protein 129 227 IPR018108 -
Vra5g1385 340 Pfam Mitochondrial carrier protein 31 119 IPR018108 -
Vra5g1385 340 Pfam Mitochondrial carrier protein 232 325 IPR018108 -
Vra5g1385 340 PRINTS Mitochondrial carrier protein signature 34 47 IPR002067 GO:0055085
Vra5g1385 340 PRINTS Mitochondrial carrier protein signature 47 61 IPR002067 GO:0055085
Vra5g1385 340 PRINTS Mitochondrial carrier protein signature 90 110 IPR002067 GO:0055085
Vra5g1385 340 PRINTS Mitochondrial carrier protein signature 140 158 IPR002067 GO:0055085
Vra5g1385 340 PRINTS Mitochondrial carrier protein signature 198 216 IPR002067 GO:0055085
Vra5g1385 340 PRINTS Mitochondrial carrier protein signature 241 263 IPR002067 GO:0055085
Vra5g1385 340 SUPERFAMILY Mitochondrial carrier 32 320 IPR023395 -
Vra5g1385 340 ProSiteProfiles Solute carrier (Solcar) repeat profile. 125 225 IPR018108 -
Vra5g1385 340 PANTHER GRAVES DISEASE MITOCHONDRIAL SOLUTE CARRIER PROTEIN-LIKE 13 333 - -
Vra5g1385 340 ProSiteProfiles Solute carrier (Solcar) repeat profile. 232 324 IPR018108 -
Vra5g1385 340 ProSiteProfiles Solute carrier (Solcar) repeat profile. 29 115 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1385 Vra-Chr5 20603564 20607738 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1385 19 307 Organic Solute Cotransporters AT4G26180 54.671 2.93e-111 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1385 - - gmx:100800243 619.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1385 5 20603564 20607738 Vra5g1385 5 20603564 20607738 ECH