Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1376 ATGGACCAGTTCAAAGGACAACCTCGTCTTCCAAAATTCGCCGTTCCCAAACGGTATGACATTAGGCTCAAGCCCGACCTCATCTCGCACCGTTTTGCTGGATCGGTCGCCGTCAATCTCGACATCGTCGCCGCCACCACTTTCATCGTTCTTAATGCTGCCGAACTCTCGGTCACCGCCGACTCCGTTTCATTCACCATTGGAGATTCCTCCACGGTTTTTAAGCCTTCGCGAATTGAGTTGATTGAAATTGATGAGATTCTGGTTCTGGAGTTCCCACAGGAAATACCAGTTGGGCAGGGTCTATTGACTATTGAGTTTGAAGGAATCTTGAACGATAGAATGAAAGGGTTCTACAGAAGTACCTATGAATATAATGGTGAGAAGAAGACTATGGCAGTTACACAGTTTGAACCAGCTGATGCCAGGCGGTGCTTTCCTTGTTGGGATGAACCTGCTTGCAAGGCTACTTTCAAGATCACATTGGATGTGCCTTCAGAGCTTGTTGCTCTTTCCAACATGCCAGTTGCTGAAGAAATAACAAATGGAAATCTAAAAACAGTTTCGTATGAAGAATCACCAATCATGTCTACATACTTGGTTGCTGTTGTCGTTGGTTTGTTTGATTATGTGGAAGATCACACCCTTGACGGCGTCAAAGTCCGAGTGTACGGTCAAGTTGGTAAGGCAAACCAGGGGAAATTTGCGCTCGATGTGGCTGTGAAAACTTTGGAACTTTACAAAGAATACTTCGCTACTCCTTACTCTCTGCCAAAATTGGATATGATTGCGATCCCTGATTTTGCTGCTGGAGCCATGGAGAATTATGGTTTGGTTACATATCGGGAGACTGCTTTGCTATATGATGAGCAGCATTCTGCGGCTGCAAACAAACAGAGGGTTGCAACTGTCGTAGCTCACGAACTAGCTCACCAGTGGTTTGGCAATCTTGTTACAATGGAGTGGTGGACACATTTATGGCTGAATGAAGGGTTTGCAACATGGGTGAGCTATTTAGCAACCGATAGCTTGTTTCCTGAGTGGCAAATATGGTCTCAATTTCTTCATGAATCCACTGAGGGTCTTAGGTTGGATGGACTAGCAGAATCCCACCCAATTGAGGTGGATATAAATCATGCTTGTGAGATTGATGAAATATTTGATGCAATAAGTTATAGAAAAGGTGCATCTGTTATTAGGATGCTACAAAGCTATCTCGGTGCTGAATGCTTTCAGAGGTCGCTGGCTTCATATATAAAAAAATATGCTTGCTCAAATGCTAAGACTGAGGATCTCTGGGCTGCACTTGAGGAAGGATCTGGTGAACCTGTGAACAAGTTAATGAACTCATGGACAAAGCAGAAGGGATATCCTGTTGTATCTGTTAAAGTTAATGAGCAGAAGTTGGAATTTGATCAGTCACAATTCTTGTCAAGCGGTGCTCAAGGAGAAGGCCAATGGATTGTTCCAGTAACTTTATGCTCTGGCACTTATGAGGTCCGCAAGAGTTTCCTCTTGCAAACAAAATCCGATGCACATGACATCAAAGACTTCATTGGTACCGCAAACATAAGTGGAAATTATTGGATTAAACTTAATGTGGATCAGGCTGGTTTTTACAGGGTGAAATACGATGAGGTGCTTGCTGCTAAACTTAGATATGCAGTAGAGAAGCAACTCTTATCTGCCTCAGACCGATTTGGCGTTTTGGATGATGCATTTGCACTTTGTATGGCTCGCCGAGAATCATTAACGTCCTTGATTAACTTGATGGGATCATACAGAGAGGAAGTTGATTATACCGTGCTGTCGAACCTAATAACTATAACTCTTAAAGTTGAGCGCATTGCAGCCGATGCTGTACCTCAATTGCTAGATTATTTCAGGCAGTTCTTTATTGGTCTTCTCCAGCACTGTGCTGAGAGGCTTGGTTGGGAGCCTAAACCAGGAGAAAGTCATCTAGATGCAATGTTGAGAGGAGAAATATTGACTGCTCTTGCTGTGCTTGGTCATGATTTAACATTGGAAGAAGGAAGCAAGCGTTTTCAGGCATTCTTAGAGGACAGGAATACACCACTTCTCCCGCCTGATACAAGAAAGGCAGCATATGTAGCTGTAATGCAAGGGGCAAGCAAATCTAATTCATCCAGTTATGAATCCCTTTTGAAAGTATATAGAGAAACTGACCTAAGCCAGGAGAAAACACGAATTCTTGGCTCTCTTTCATCTTCACGTGATCCAGGTCTAATTCTTGAAGCTCTCAACTTTATGTTGTCATCTGAGGTTCGAAGCCAGGATGCCGTTTTTGGACTTGCTGTTAATAGAGAAGGACGAGATGTAGCTTGGGCGTGGCTTAAGGAAAATTGGGAACACCTCGTAAAAACATATGGTTCAGGATTTCTGATAACTCGCTTTGTCAGTGCAGTTGTCTCACCGTTTGCATCCTTTGAGAAGGTCAAGGAGGTAGAAGAATTCTTTGCTAGCCATGCTATGCCTTCCATTGCTAGAACTTTAAGGCAGAGCCTTGAGCGGGTTAATATCAATGCAAACTGGGTTGAGAGTATTCGGAAGGAAGACAGCCTTAGTGATGCTGTGAGGGAACTGGCATACAGAAAATATTAG 2622 0.4348 MDQFKGQPRLPKFAVPKRYDIRLKPDLISHRFAGSVAVNLDIVAATTFIVLNAAELSVTADSVSFTIGDSSTVFKPSRIELIEIDEILVLEFPQEIPVGQGLLTIEFEGILNDRMKGFYRSTYEYNGEKKTMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNMPVAEEITNGNLKTVSYEESPIMSTYLVAVVVGLFDYVEDHTLDGVKVRVYGQVGKANQGKFALDVAVKTLELYKEYFATPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDEQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLATDSLFPEWQIWSQFLHESTEGLRLDGLAESHPIEVDINHACEIDEIFDAISYRKGASVIRMLQSYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVVSVKVNEQKLEFDQSQFLSSGAQGEGQWIVPVTLCSGTYEVRKSFLLQTKSDAHDIKDFIGTANISGNYWIKLNVDQAGFYRVKYDEVLAAKLRYAVEKQLLSASDRFGVLDDAFALCMARRESLTSLINLMGSYREEVDYTVLSNLITITLKVERIAADAVPQLLDYFRQFFIGLLQHCAERLGWEPKPGESHLDAMLRGEILTALAVLGHDLTLEEGSKRFQAFLEDRNTPLLPPDTRKAAYVAVMQGASKSNSSSYESLLKVYRETDLSQEKTRILGSLSSSRDPGLILEALNFMLSSEVRSQDAVFGLAVNREGRDVAWAWLKENWEHLVKTYGSGFLITRFVSAVVSPFASFEKVKEVEEFFASHAMPSIARTLRQSLERVNINANWVESIRKEDSLSDAVRELAYRKY* 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1376 873 Gene3D - 457 544 - -
Vra5g1376 873 Pfam Peptidase M1 N-terminal domain 15 200 IPR045357 -
Vra5g1376 873 Pfam ERAP1-like C-terminal domain 529 846 IPR024571 -
Vra5g1376 873 Gene3D - 547 859 - -
Vra5g1376 873 SUPERFAMILY Leukotriene A4 hydrolase N-terminal domain 9 206 IPR042097 -
Vra5g1376 873 PRINTS Membrane alanyl dipeptidase (M1) family signature 143 158 IPR001930 GO:0006508
Vra5g1376 873 PRINTS Membrane alanyl dipeptidase (M1) family signature 190 205 IPR001930 GO:0006508
Vra5g1376 873 PRINTS Membrane alanyl dipeptidase (M1) family signature 268 278 IPR001930 GO:0006508
Vra5g1376 873 PRINTS Membrane alanyl dipeptidase (M1) family signature 304 319 IPR001930 GO:0006508
Vra5g1376 873 PRINTS Membrane alanyl dipeptidase (M1) family signature 323 335 IPR001930 GO:0006508
Vra5g1376 873 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 215 462 - -
Vra5g1376 873 Gene3D Neutral Protease Domain 2 209 456 IPR027268 -
Vra5g1376 873 CDD M1_APN-Q_like 18 453 IPR034016 -
Vra5g1376 873 PANTHER AMINOPEPTIDASE 3 869 - -
Vra5g1376 873 Pfam Peptidase family M1 domain 235 451 IPR014782 GO:0008237|GO:0008270
Vra5g1376 873 Gene3D tricorn interacting facor f3 domain 3 208 IPR042097 -
Vra5g1376 873 PANTHER PROTEASE M1 ZINC METALLOPROTEASE 3 869 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1376 Vra-Chr5 20531298 20538573 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1376 K08776 - gmx:100811437 1539.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1376 5 20531298 20538573 Vra5g1376 5 20531298 20538573 ECH