Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1373 ATGGCGGATCCCTATTACCCATATAGTTTTCCGGCAGCTGCCGACGGAGCAAGTATTGCGAGGACCAGCTTTGCTGGATATATTCCAACCGAGCCTTCAAATTCTACTGAACTGCGGGGCACTGGATCAGATTACCTGCAAAGAGATATAGGCTTGTTTTATAGTGCAGATGATACTTTGGGATCTAGGGTTCATTCTGAGCCTGTTAAGGGTTATTCACCTCTCGCAGATCCTGACCTGACTAAAAAACGAGACATGACACCATTAGGCATTAGTCATGGTGTTTCTGATGTGAACAGTGAAAGAGCATCATCTAAAAACACTTATGATGGTCTGCCTATTTCAGCAGCGGACTCAAACATTCTGTTTGTGGGTGGACTTCCAAATAACTGCACTAGAAGGGAAGTTGGGCATCTTTTCCGCCCCTTTATTGGCTATAAGGATATTAGAGTTGTTCACAAGGAGCCTAGACGTAGCGATGACAAGGCTATGACTTTGTGTTTTGTGGAGTTTGTTGACTCGAAATGTGCTCTCACTGCCCTGGAAGCCCTGCAAGGCTACAAGTTTGATGATAAAAAGCCTGACTCGCCAACCCTAAAAATACAGTTTGCGCACTTTCCATTCCGTCTACCGTCTGATCATGGCAACAGCATAACAACATGA 663 0.4495 MADPYYPYSFPAAADGASIARTSFAGYIPTEPSNSTELRGTGSDYLQRDIGLFYSADDTLGSRVHSEPVKGYSPLADPDLTKKRDMTPLGISHGVSDVNSERASSKNTYDGLPISAADSNILFVGGLPNNCTRREVGHLFRPFIGYKDIRVVHKEPRRSDDKAMTLCFVEFVDSKCALTALEALQGYKFDDKKPDSPTLKIQFAHFPFRLPSDHGNSITT* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1373 220 MobiDBLite consensus disorder prediction 70 102 - -
Vra5g1373 220 Gene3D - 115 206 IPR012677 -
Vra5g1373 220 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 17 212 - -
Vra5g1373 220 CDD RRM_RBPMS_like 120 202 - -
Vra5g1373 220 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 206 IPR000504 GO:0003723
Vra5g1373 220 SMART rrm1_1 121 202 IPR000504 GO:0003723
Vra5g1373 220 SUPERFAMILY RNA-binding domain, RBD 90 193 IPR035979 GO:0003676
Vra5g1373 220 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 193 IPR000504 GO:0003723
Vra5g1373 220 PANTHER PROTEIN COUCH POTATO 17 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1373 Vra-Chr5 20496728 20501001 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1373 - - gmx:100809186 401.749