Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1369 ATGAAGAAGGCGAAGAAGAGTGTGGAAGAAAATGGGGGAAAGTTCAATGGTGCTGAGAGGTCAGCGTATTTCGCACGCAGAGAGGCAGCGAAGGTGTTGAGAGTGGTTCTCGAAGGAGACTCTAAGCGCCGCGCTCTTGCCTCCATCAAATCCCTCATCTATCAACCTTCCGTTAGGAACAAGAAGGGCACCTTCGCTCTCATTTGTCAAACCCTAAAACATCTTCCCATCATCAAAGATGTCTTGGAAGCTGCTTCCATTCTCAACACCAAGTGGAAGAGGCAACGGGAATTGGTTTATATCATTGTCTATGATATCCTTTTCGGCAAGGCGGTTTCACTAGTTGGTGATGCAGAGAAGTACCTTATGCGACACGAAGGCGCTCTGCGTTCGACTCTTAAACAGCTTTGGTTACAGAGAAATGTGAAGACTGTTAAACAGTTGATTGCTCTGCATGAAATTCCAGATGTTTCTGTACCTCGGTATGTTCGTGTGAATACGCTTAAACTGGATGTTGATTCTGCCTTGCTTGAACTTCAGAAAAATTACCCGGTTCAAAAAGATAATCTGCTGGCTGAGTTACTGATACTCCCAAAAGGCACTGATTTACATGATCACCCTCTTGTTAAAAACGGCAGTATCTTTATGCAAGGTAAGGCAAGTTCCATGGCAGCACCAGCTCTTAGCCCTCAACCAGGATGGGAGGTTATTGATGCGTGTGCAGCACCGGGAAACAAAACTATTCACCTTGCTGCGCTTATGAAGAGTAGGGGAAAGATTGTAGCATGTGAGCTGAAAAAAGAAAGAGTTAAGCGATTGAAAGACACTATAAAGCTATCTGGGGCTTCTAACATACAAGTCCTGAATGAGGATTTCTTGAACATAAATCCCAAGGATCCTTCATATTCTAAGGTGAACGCTATTCTCTTGGATCCTTCCTGCTCTGGTTCTGGTACTTCTGCCTCAAGATTGGACCATCTGCTCCCATCTAAAACAGCAGGTCAGGATACTGATATGGAAAGATTGAGTAAGCTTGCAACTTTCCAGAGAAAGGCTCTTCAGCATGCTTTACTTTTTCCAGGTCTTGAAAGAATTGTCTATAGTACATGTTCAATCAACCAAATCGAGAATGAAGATGTGATCAAATCTGTTCTTCCCATTGCCGAATCATACGGATTTCAATTAGCCAAGCCTTTCCCCGAGTGGCAATGCCGTGGTCTTCCGGTGTTTGAAGGCTCTGAATGCCTGATTCGGACAGATCCTGCGGAGCATGGCGAGGGTTTTTTCATTGCTTTGTTTGTTAGGAAAGATGCATCTTCGGACTGTTCAAATAAAATCGAAACTAGAATTTCCCGTAGCACTCCTCCCGGAATTAAAAACGCGCAAAGAAAGAAGAAACGTATACCGTTCATTAGCACGAACCCATTCAAAATGTGGTTATATGATCAACTGATGTAG 1458 0.4383 MKKAKKSVEENGGKFNGAERSAYFARREAAKVLRVVLEGDSKRRALASIKSLIYQPSVRNKKGTFALICQTLKHLPIIKDVLEAASILNTKWKRQRELVYIIVYDILFGKAVSLVGDAEKYLMRHEGALRSTLKQLWLQRNVKTVKQLIALHEIPDVSVPRYVRVNTLKLDVDSALLELQKNYPVQKDNLLAELLILPKGTDLHDHPLVKNGSIFMQGKASSMAAPALSPQPGWEVIDACAAPGNKTIHLAALMKSRGKIVACELKKERVKRLKDTIKLSGASNIQVLNEDFLNINPKDPSYSKVNAILLDPSCSGSGTSASRLDHLLPSKTAGQDTDMERLSKLATFQRKALQHALLFPGLERIVYSTCSINQIENEDVIKSVLPIAESYGFQLAKPFPEWQCRGLPVFEGSECLIRTDPAEHGEGFFIALFVRKDASSDCSNKIETRISRSTPPGIKNAQRKKKRIPFISTNPFKMWLYDQLM* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1369 485 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 160 436 IPR029063 -
Vra5g1369 485 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 151 436 IPR001678 GO:0008168
Vra5g1369 485 Gene3D Sun protein; domain 3 152 216 - -
Vra5g1369 485 Pfam 16S rRNA methyltransferase RsmB/F 227 433 IPR001678 GO:0008168
Vra5g1369 485 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 16 443 IPR023267 GO:0001510
Vra5g1369 485 PRINTS RNA (C5-cytosine) methyltransferase signature 208 222 IPR023267 GO:0001510
Vra5g1369 485 PRINTS RNA (C5-cytosine) methyltransferase signature 237 247 IPR023267 GO:0001510
Vra5g1369 485 PRINTS RNA (C5-cytosine) methyltransferase signature 306 318 IPR023267 GO:0001510
Vra5g1369 485 PRINTS RNA (C5-cytosine) methyltransferase signature 362 378 IPR023267 GO:0001510
Vra5g1369 485 PRINTS RNA (C5-cytosine) methyltransferase signature 418 435 IPR023267 GO:0001510
Vra5g1369 485 Gene3D Vaccinia Virus protein VP39 217 443 IPR029063 -
Vra5g1369 485 CDD AdoMet_MTases 236 324 - -
Vra5g1369 485 PANTHER BNAA09G04380D PROTEIN 16 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1369 Vra-Chr5 20467433 20472688 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1369 K15264 - gmx:100775620 840.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1369 5 20467433 20472688 Vra5g1369 5 20467433 20472688 ECH