Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1363 ATGGCTCGGGCATTTGGAAAAGCCATAGCAAAACCTTCTTCTTCTTCTTTGTCTTCTTCATCCAACATTCCAAATCGAAATCTCTGCCTCATAACATCCATCACCTCAATCCTTCAAAATCTAAATCCCCAAATCCCAGATTTCTCATCCCTCAATAAATTTTCTCCTCACCTCAGCCCGAACTTGGTCATTCAGGTGATCAAGAACCAAAAGAACCCACACCACGCTCTTCAATTCTTCAACTGGGCCTCCAACCCTAACCCCAACCCTAAGAACTACTCCCACACCCCCTTATGCTACGCCGCCATCACCGACCTCTTGCTCTCCCACTCCCTCTTCTCCACCGCTTACTCCCTTCTTCACCACTCCAACAAACTCTCCGACTTCCTTATCTGCAGATTCATCAACGCTCTCGGTCACTGCGGCGATATCAGGGGCGCCGTTCACTGGTTCCACAAAGCAAAAAACTTGGGAAGAGAACACTGCGTCTACTCATGCAACGCCGTCTTGAGCGTCCTCGTCAGGGCCAACCGTGTCAATTTTGCCAAGGCCATCTACAATCAGGTTCTCTCAGAAGCTGTGATAGAACCCGATGTTTACACTCACACCACCATGATTCGTGGGTTTTGCAAAGTGGGGATGGTCGAGAGTGCGCGCAAGGTGTTCGATGAAATGCGCTGCGAACCCAACATTGTTACTTACAACACTTTGATCCACGGGTTTTGTAAGAAGGGTGACATGGAGGGTGCGCGGTCGGTTTTTGACAGATTGGTGGAGAGTAAGAGTTGTGAGCCGGATGTGGTGAGTTTCACCACTTTGATTGATGGGTATTCGAAGAGAGGTGAATTCAAAAAGGCGGTGGAGTGTCTGAAGCAGATGACGGAACGAGGGTGTTCTCCGAATGTTGTGACCTACAATGCCTTGGTTGAAGGTCTTTGCTTGAGCGGAGAAGTGGATGAGGCAAAGATGATGATGGGTAGGATGCGGTTGAATGGTTTGAAAGACAATGTCGCCACAAACACTAGCTTGTTGAAGGGGCTGTGTATTGTGGGAAAGTCCGATGATGCATTTAAGCATTTCAGGGAAATGGCTAGTCGGGGGATGAAGCCGGATGTGAAAGCCTATGGGGTTGTTGTGAATGAGTATTGCAAAATTGGAAAACCAAGAGAAGCAGTCTCACTTCTGAGAGAAATGGTGACGAGGGGTGTTAAGCCAAGTGTGTCAAGCTTCAATGCAGTGTTTAGAGTTCTTGTGGATGAGGGGAAGATTGATGAAGGAGTTCTTCTTTTGAAGCAGATGAGTCATATGGGATGCTCACCCAACTTCTTGTCATATTGCATATTGGTATGTGGCCTCTGTAAAGTGAAGAGTAGGATGCAGGCAGTTGAAGAGCTTGTTTCAGACATGCTTCAGAATGGGCATAACCTGGACGCAACTATGTATAACTGCTTACTTCAGGGATATTGTGAAGACGGGGATGAAGAAATGGCACTAAAGACATATTATGACATTATGAATAAGAACTTTGTAATCAAGCAAGACGTTTTCAGCACTTTTGTGAAGTTGATGTGTGCAAAGGGGAAATTGAAAGAGGGGGATACAGTCTTTGAGGGATGCTTGCTCGGGGGATTCCAGTTAAGTGGGAAAGTTGAGGCTAATGCAACAGAGGAACCTGGAACACTGACGTAA 1689 0.4671 MARAFGKAIAKPSSSSLSSSSNIPNRNLCLITSITSILQNLNPQIPDFSSLNKFSPHLSPNLVIQVIKNQKNPHHALQFFNWASNPNPNPKNYSHTPLCYAAITDLLLSHSLFSTAYSLLHHSNKLSDFLICRFINALGHCGDIRGAVHWFHKAKNLGREHCVYSCNAVLSVLVRANRVNFAKAIYNQVLSEAVIEPDVYTHTTMIRGFCKVGMVESARKVFDEMRCEPNIVTYNTLIHGFCKKGDMEGARSVFDRLVESKSCEPDVVSFTTLIDGYSKRGEFKKAVECLKQMTERGCSPNVVTYNALVEGLCLSGEVDEAKMMMGRMRLNGLKDNVATNTSLLKGLCIVGKSDDAFKHFREMASRGMKPDVKAYGVVVNEYCKIGKPREAVSLLREMVTRGVKPSVSSFNAVFRVLVDEGKIDEGVLLLKQMSHMGCSPNFLSYCILVCGLCKVKSRMQAVEELVSDMLQNGHNLDATMYNCLLQGYCEDGDEEMALKTYYDIMNKNFVIKQDVFSTFVKLMCAKGKLKEGDTVFEGCLLGGFQLSGKVEANATEEPGTLT* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1363 562 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 228 IPR002885 -
Vra5g1363 562 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Vra5g1363 562 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
Vra5g1363 562 Pfam PPR repeat family 405 454 IPR002885 -
Vra5g1363 562 Pfam PPR repeat family 336 384 IPR002885 -
Vra5g1363 562 Pfam PPR repeat family 265 313 IPR002885 -
Vra5g1363 562 Pfam PPR repeat 480 508 IPR002885 -
Vra5g1363 562 TIGRFAM PPR: pentatricopeptide repeat domain 374 407 IPR002885 -
Vra5g1363 562 TIGRFAM PPR: pentatricopeptide repeat domain 409 441 IPR002885 -
Vra5g1363 562 TIGRFAM PPR: pentatricopeptide repeat domain 200 229 IPR002885 -
Vra5g1363 562 TIGRFAM PPR: pentatricopeptide repeat domain 480 510 IPR002885 -
Vra5g1363 562 TIGRFAM PPR: pentatricopeptide repeat domain 232 267 IPR002885 -
Vra5g1363 562 TIGRFAM PPR: pentatricopeptide repeat domain 268 302 IPR002885 -
Vra5g1363 562 TIGRFAM PPR: pentatricopeptide repeat domain 303 333 IPR002885 -
Vra5g1363 562 TIGRFAM PPR: pentatricopeptide repeat domain 341 372 IPR002885 -
Vra5g1363 562 Pfam PPR repeat 227 256 IPR002885 -
Vra5g1363 562 Pfam PPR repeat 195 226 IPR002885 -
Vra5g1363 562 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 370 IPR002885 -
Vra5g1363 562 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 440 IPR002885 -
Vra5g1363 562 MobiDBLite consensus disorder prediction 1 22 - -
Vra5g1363 562 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 265 IPR002885 -
Vra5g1363 562 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 477 511 IPR002885 -
Vra5g1363 562 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 266 300 IPR002885 -
Vra5g1363 562 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 17 538 - -
Vra5g1363 562 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 17 538 - -
Vra5g1363 562 SUPERFAMILY HCP-like 136 325 - -
Vra5g1363 562 Gene3D Tetratricopeptide repeat domain 458 537 IPR011990 GO:0005515
Vra5g1363 562 Gene3D Tetratricopeptide repeat domain 121 245 IPR011990 GO:0005515
Vra5g1363 562 Gene3D Tetratricopeptide repeat domain 351 457 IPR011990 GO:0005515
Vra5g1363 562 Gene3D Tetratricopeptide repeat domain 246 350 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1363 13 553 Glycosyltransferase AT1G05670 25.535 8.23e-50 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1363 - - gmx:100802054 889.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1363 5 20437135 20439482 Vra5g1363 5 20437135 20439482 ECH