Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1352 ATGCTAGCTTATTTGGAGCACTTCGTTCACGAAAAAGATGCGGAATCGAGGCAAGACGACGAAGTTGCCAGCCTCTCCAGAGCGCTTGAACTTCAAGCCAGTATCGACGAATTGGGTCCCACCGGAATCGCCAGTAAGGATTTCGGCGGCATCAAGTCCGTGAAACCCTTGGCCATGATCAGGCCTTCCTCGGCCGTGGACGTGGCCAGAGTGGTGAAAGCCGCAGCGGCGTCTCCGAGTCTGACGGTGGCGGCGCGGGGGAACGGGCACTCGGTGAACGGGCAGGCCATGGCGGAGAAGGGACTGGTCCTCGACATGCGTGCCTTGGAGGAGCCTTTTGAGATTGTCTGGATAGAAGGCACGGCCTACTTGGACGTCTCGGGAGGGGCATTATGGGAAGACGTCCTTAAACGGTGCGTTTCGGAGGTTGGACTCGCTCCGAGGTCGTGGACGGACTATCTCGGTTTAACAGTGGGTGGAACGCTGTCCTACGCCGGCGTCAGTGGGCAAACCTTCCGTTACGGTCCTCAGACATCCAACGTAACGGAATTGGAAGTTGTAACTGGGAAAGGCGAAACCCTGTGCTGCTCCCTGACACAAAACTCTGAACTTTTCTTTGGTGCGCTCGGTGGCTTAGGACAGTTGGGTATTATTACGAGGGCTAGGGTCGTTCTTCAACAAGCTCCAGATATGGTGAGGTGGATAAGAGTGGTTTACTCTGAATTTGAGGAGTATGCTGGGGACGCAGAGTTGCTGGTGGGGGAAGTAGAGGAATGTTTTGATTACGTGGAAGGGTTCGTTCTGGTGAACAGTGACGACCCGGGCAATGGATGGCCCACGGTGCGATTGGACCCGGAACAAGTGTTCGACCCGATTCATATTCCTTCCACTGCTGGTCCAGTTTTATATTGCTTGGAGCTGGGTCTTCATTATGGTAACGCGGATTATCCTTCCCGTGGGCGTGTGGATATGGATGTGGATCGATTGCTCGGACGGCTACGATTCATTCCGGGTCTCAAGTTCCAGACGGATGTGAGCTACACGGAGTTTTTGCTACGTGTAAAGCGCGTGGAGGAGCACGCAAAAGCCAGCGGCACCTGGGATGCGCCTCATCCTTGGCTGAATTTGTTTGTGTCCAAGTCCGACATTGTTGATTTCGATCGTGAGGTGTTCAAGAAGATTCTCAAGGACGGGGTGGATGGCCCCATTTTAGTCTACCCTCTCTTGCGAACCAAGTGGGATAATCGTCAGTCGGTGGTGGTGCCTGACAGTGACATCTTCTACATAGTAGCCTTGCTCCGATTCAGCCCACCACCTCCAAAGGGTCCACCACCTGAATTCTTGGTGGCGCAAAACAATGAGATTATTCAGTTCTGCACAACCAGAGGCCTTGATTTCAAGCTATACTTTCCTCACTACCACTCTCGGGAGGATTGGATGAAACACTTCGGGAAACAGTGGACCAGATTTGTGGAACGAAAGGCCAATTTTGATCCCATGGCTATCCTTGCGCCAGGGCAGAGAATTTTCTCCAGAACCTCCCAACCTCGTCCTATCACATAA 1563 0.5323 MLAYLEHFVHEKDAESRQDDEVASLSRALELQASIDELGPTGIASKDFGGIKSVKPLAMIRPSSAVDVARVVKAAAASPSLTVAARGNGHSVNGQAMAEKGLVLDMRALEEPFEIVWIEGTAYLDVSGGALWEDVLKRCVSEVGLAPRSWTDYLGLTVGGTLSYAGVSGQTFRYGPQTSNVTELEVVTGKGETLCCSLTQNSELFFGALGGLGQLGIITRARVVLQQAPDMVRWIRVVYSEFEEYAGDAELLVGEVEECFDYVEGFVLVNSDDPGNGWPTVRLDPEQVFDPIHIPSTAGPVLYCLELGLHYGNADYPSRGRVDMDVDRLLGRLRFIPGLKFQTDVSYTEFLLRVKRVEEHAKASGTWDAPHPWLNLFVSKSDIVDFDREVFKKILKDGVDGPILVYPLLRTKWDNRQSVVVPDSDIFYIVALLRFSPPPPKGPPPEFLVAQNNEIIQFCTTRGLDFKLYFPHYHSREDWMKHFGKQWTRFVERKANFDPMAILAPGQRIFSRTSQPRPIT* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1352 520 Gene3D - 106 230 IPR016169 -
Vra5g1352 520 SUPERFAMILY FAD-binding/transporter-associated domain-like 44 225 IPR036318 GO:0050660
Vra5g1352 520 Gene3D - 232 469 IPR016170 -
Vra5g1352 520 ProSiteProfiles PCMH-type FAD-binding domain profile. 52 228 IPR016166 GO:0071949
Vra5g1352 520 PANTHER CYTOKININ DEHYDROGENASE 7 13 515 - -
Vra5g1352 520 Pfam FAD binding domain 56 196 IPR006094 GO:0050660
Vra5g1352 520 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 229 510 IPR015345 GO:0009690|GO:0019139|GO:0050660
Vra5g1352 520 Gene3D - 44 511 IPR016167 -
Vra5g1352 520 PANTHER GULONOLACTONE OXIDASE 13 515 - -
Vra5g1352 520 SUPERFAMILY FAD-linked oxidases, C-terminal domain 229 510 IPR016164 GO:0003824|GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1352 Vra-Chr5 20371033 20375137 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1352 K00279 - gmx:100795849 872.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1352 5 20371033 20375137 Vra5g1352 5 20371033 20375137 ECH