Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1351 ATGGAGAGGTTTTCGTCTTACAGGCGTCGTTCTGTCGGAGAGGGCAGTTCCGCTTCAGCCGAGGACAATCGCCGGAAGCGCGCCAGAGTGTATTTTGATTTCGATGGCGCTCATTCTGCGATTGCGGGTTCTTCGAATGTTGGGAAATCCAGTGCATCTGCCGAACATGGGGATTGTAATGATATTCAGGAATCGTCTGTTCGATCCAATGATGATGCTTTGCGGTTGATGTCTTCTGGTGAGGGGAGTAACTTTGATGAAGGAGATGACAGTGACATCGCAAATGTAGATGATCAAGTAACCAAGATGGATCTTACGGATGATTTGTTGCACATGGTTTTCTCCTTTTTGGATCACCCCAATCTCTGCAAAGCTGCCAGGGTTTGTAATCAGTGGAGAACTGCCAGTGCTCACGAAGACTTCTGGAAGAGTTTGAATTTTGAAGATCGTAACATTTCTGTTGAGCAATTCGAGGATATCTGTAGGCGTTATCCTAAAATCGCAACAATCCGCTTGTCCGGTCCTCCCTCGTACCAGCTTGTCATGAAGGCCGTCTCTTCGTTAAGAAATCTTGAGGCTTTAACGTTGGGAAGAGGAAATATAATGGATAGTTTTTTCCATGCTCTGGCTGATTGTTCTATGCTGAGGAGACTGAGCATCAATGATGCTGTACTTGGCAGTGGTATTCAGGAAATATCAGTTAATCACGACAGACTGTGTCATCTTCAGTTGACTAAGTGCCGCGTGATGCGTATAGCTGTCAGGTGCCCACAACTCGAAACCATGTCCTTGAAGCGCAGTAATATGGCTCAGACTGTACTCAACTGCCCCCTTTTGCAAGAGCTTGATATAGGGTCTTGCCACAAACTTCCTGATTCTGCTATTCGATCAGCTGTGACGTCATGCCCGCAATTAGTTTCTTTGGACATGTCTAATTGTTCATGTGTTAGTGATGAAACATTAAGGGAGATAGCCCAGAATTGTGCCCACCTCAGTTTTCTTGATGCATCATACTGTCCAAATGTATCCCTAGAGACTGTTCGACTGCCAATGTTAACAACTCTGAAGCTACACAGTTGTGAGGGCATCACTTCAGCTTCAATGGCCGCAATAGCTTATAGTTCCATGTTGGAGGTTTTGGAGCTTGATAATTGTAGCCTATTGACATCAGTGTCTTTAGATCTTCCTCGCTTGCAGAACATTAGATTGGTTCATTGTCGCAAATTTGCCGATTTGAATTTGATGACCCTGACGCTGTCTTCTATTTTGGTGTCCAATTGTCCTGTGCTCCATCGTATAAACATCACATCAAATTCACTTCAAAAATTAACTATACCAAAGCAGGACAGCTTAACCACATTGGCTTTGCAATGCCAATCTTTGCAAGAAGTGGATCTCTCTGAATGTGAATCTTTGAATAACTCTGTATGCAATGTTTTTAATGATGGTGGAGGCTGTCCAGTGTTGAAATCATTAATTCTCGATAATTGTGAGAGTTTGACATCGGTTCAATTCATCAGTACCTCTTTAATCTGTCTTTCACTTGGTGGTTGCCGGGCAATAACTAATCTTGATCTCACATGCCCTAATCTAGAGAAACTTGTATTGGATGGCTGTGATCATTTGGAAAGAGCGTCATTTTGTCCTGTTGGTCTTTCATCTCTCAATTTAGGAATATGTCCAAAATTGAGTACACTCAGCATTGAAGCACCTTATATGGTTTCACTTGAGTTGAAAGGATGTGGTGTACTATCTGAAGCATTCATTAATTGTCCACTCTTAACATCTCTCGATGCTTCCTTTTGCAGCCAACTACCTGATGACTGCTTGTCTGCTACAACTGTCTCATGCCCACTGATTGAGTCATTGATATTGATGTCATGCCCATCAATTGGTTCAGACGGTCTTCGATCTTTATTTTGTCTACCAAATTTGACTGTTCTTGACTTATCATACACTTTCTTGGTGAACTTGCAACCTGTTTTTGATTCTTGTTTACAGTTAAAGGTGTTAAAGCTGCAAGCATGNAAATATCTCACTGAAACATCACTTGAACCACTTTACAAAGGAGGGGCTTTACCAGCACTTCAGGAGTTAGACTTGTCTTATGGAACTTTCTCTCAGTCAGCCATAGATGAGCTTCTTGCTTGCTGCACAAACCTCACTCATGTGAGCTTGAATGGCTGTTTGAATATGCATGATTTGAATTGGGGATGCAGTTGTGGGCAGAGTAAGAATTTGCCCGCTGCAAACACCCTATCCAGGGCAAGTTCTAATGAGAATATTCCTGAATCAAGTGAGCAATCCCCTCGCTTGTTGCAAAACCTTAATTGTGTTGGATGTCCAAATATTAGGAAGGTTGTCATTCCATTGAGGGCAAATTGTTGTCATTTGTCAAATTTAAACCTTTCGCTCTCTGCAAATTTGAAAGAGGTTGATGTTACTTGTCTCAACCTATGCTTTCTTAATTTAAGCAATTGTTCCTCTCTGGAAATTTTGAAGCTAGAGTGTCCAAGATTGACTAGTCTATTCCTTCAGTCTTGCAATGTTGACGAGGAAGCTGTTGAAGCTGCTATATCGAAATGCAATATACTGGAGACTCTTGATGTTCGCTTTTGTCCAAAGATAAGCTCAATGAGCATGGGAAGATTACGCACAATTTGTTCGAGTTTGAAGCGTATATTCAGCAGTTCGTCAACTTTGTTACCTTGA 2712 0.42 MERFSSYRRRSVGEGSSASAEDNRRKRARVYFDFDGAHSAIAGSSNVGKSSASAEHGDCNDIQESSVRSNDDALRLMSSGEGSNFDEGDDSDIANVDDQVTKMDLTDDLLHMVFSFLDHPNLCKAARVCNQWRTASAHEDFWKSLNFEDRNISVEQFEDICRRYPKIATIRLSGPPSYQLVMKAVSSLRNLEALTLGRGNIMDSFFHALADCSMLRRLSINDAVLGSGIQEISVNHDRLCHLQLTKCRVMRIAVRCPQLETMSLKRSNMAQTVLNCPLLQELDIGSCHKLPDSAIRSAVTSCPQLVSLDMSNCSCVSDETLREIAQNCAHLSFLDASYCPNVSLETVRLPMLTTLKLHSCEGITSASMAAIAYSSMLEVLELDNCSLLTSVSLDLPRLQNIRLVHCRKFADLNLMTLTLSSILVSNCPVLHRINITSNSLQKLTIPKQDSLTTLALQCQSLQEVDLSECESLNNSVCNVFNDGGGCPVLKSLILDNCESLTSVQFISTSLICLSLGGCRAITNLDLTCPNLEKLVLDGCDHLERASFCPVGLSSLNLGICPKLSTLSIEAPYMVSLELKGCGVLSEAFINCPLLTSLDASFCSQLPDDCLSATTVSCPLIESLILMSCPSIGSDGLRSLFCLPNLTVLDLSYTFLVNLQPVFDSCLQLKVLKLQAXKYLTETSLEPLYKGGALPALQELDLSYGTFSQSAIDELLACCTNLTHVSLNGCLNMHDLNWGCSCGQSKNLPAANTLSRASSNENIPESSEQSPRLLQNLNCVGCPNIRKVVIPLRANCCHLSNLNLSLSANLKEVDVTCLNLCFLNLSNCSSLEILKLECPRLTSLFLQSCNVDEEAVEAAISKCNILETLDVRFCPKISSMSMGRLRTICSSLKRIFSSSSTLLP* 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1351 903 PANTHER OS10G0396666 PROTEIN 22 862 - -
Vra5g1351 903 SUPERFAMILY RNI-like 349 568 - -
Vra5g1351 903 MobiDBLite consensus disorder prediction 40 93 - -
Vra5g1351 903 SMART LRR_CC_2 302 327 IPR006553 -
Vra5g1351 903 SMART LRR_CC_2 617 642 IPR006553 -
Vra5g1351 903 SMART LRR_CC_2 276 301 IPR006553 -
Vra5g1351 903 SMART LRR_CC_2 458 482 IPR006553 -
Vra5g1351 903 SMART LRR_CC_2 486 516 IPR006553 -
Vra5g1351 903 SMART LRR_CC_2 395 420 IPR006553 -
Vra5g1351 903 SMART LRR_CC_2 837 861 IPR006553 -
Vra5g1351 903 SMART LRR_CC_2 591 616 IPR006553 -
Vra5g1351 903 SMART LRR_CC_2 528 553 IPR006553 -
Vra5g1351 903 SMART LRR_CC_2 862 893 IPR006553 -
Vra5g1351 903 SMART LRR_CC_2 693 717 IPR006553 -
Vra5g1351 903 SMART LRR_CC_2 349 374 IPR006553 -
Vra5g1351 903 PANTHER OS10G0396666 PROTEIN 22 862 IPR044703 GO:0010252|GO:1905393
Vra5g1351 903 Pfam F-box-like 107 147 IPR001810 GO:0005515
Vra5g1351 903 Gene3D Ribonuclease Inhibitor 807 901 IPR032675 -
Vra5g1351 903 MobiDBLite consensus disorder prediction 43 77 - -
Vra5g1351 903 SMART fbox_2 105 145 IPR001810 GO:0005515
Vra5g1351 903 SUPERFAMILY F-box domain 92 155 IPR036047 GO:0005515
Vra5g1351 903 Gene3D Ribonuclease Inhibitor 97 348 IPR032675 -
Vra5g1351 903 Gene3D Ribonuclease Inhibitor 657 804 IPR032675 -
Vra5g1351 903 Gene3D Ribonuclease Inhibitor 349 505 IPR032675 -
Vra5g1351 903 Gene3D Ribonuclease Inhibitor 506 656 IPR032675 -
Vra5g1351 903 SUPERFAMILY RNI-like 144 406 - -
Vra5g1351 903 SUPERFAMILY RNI-like 555 895 - -
Vra5g1351 903 MobiDBLite consensus disorder prediction 1 22 - -
Vra5g1351 903 ProSiteProfiles F-box domain profile. 99 145 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1351 Vra-Chr5 20358479 20364514 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1351 - - gmx:100786178 1526.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1351 5 20358479 20364514 Vra5g1351 5 20358479 20364514 ECH