Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1340 ATGGGTAACAGACAAGTACTTTTGGCCATGATTATAGCATGGCTTACTTTGTTTGAAGGAAACATGATGCTTGTTAGTGGCGGTCTCAATTACAAGGAGGCTCTCACCAAGTCCCTTATCTTCCTTGAGGCACAACGATCAGGGAAACTTCCCTCAAGTAATAGGGTGCCCTGGAGAGGAGACTCAGCACTCGATGATGGAAAACTCGCCAACGTGGACCTTGTCGGAGGATACTATGATGCAGGGGACAATGTGAAATATGGTCTCCCCATGGCTTTCACCGTTACTACGCTGGCATGGGCTGCTATTTTTTACAAGGAAGAATTTAAAGAAGCAAAAGAGATGGATCATCTTATCGATGCCATTCGCTGGGGCACTGATTATTTTCTCAAAGCTAGTTCTCGACGCAAAAGATTATACGTAGAGGTAGGAGACGCGGAAGAGGATCACAAGTGTTGGATTCCACCAGAATATATGAAGACACCGAGAACGGTTAAGAAGATTGGTGACGGCACGTCCGGGAGTGAAATCGCAGCTGAAACTGCAGCTGCAATGGCAGCTTCTTCCATCGTTTTCAGACCCAAAAATCGTAAATATTCTCGTTCTCTTCTCAATAGAGCTAAAACGCTTTTCCTTATGGCCAAATCGCATAAAGGAACGTATGATGGAGAGTGTCCCTTCTACTGCTCTTATTCCGGCTATAATGACGAATTGATGTGGGCAGCAACATGGCTATACATTGCTACGAAGAGGTCAATCTATTTAAAGTACATATTAGAAGATTCCAAGAGTGCTAGTGTATCAGAATTTAGTTGGGACCTTAAATATGCCGGAGCTCAAGTCCTTCTTAGCCAGTTATATTTCGACGGTGAAAAGAAGTTCGTGAAATTCAAATACCATGCAGAAAGTTTCATATGCTCTGTCCTTCCAGACAGTCCCTACCACCAGATTACAATGTCTCCTGGTGAGTACCCTCTTCCTTTGTTTGTGTTTGCAGTGCTAAAAATGAAGGAAATCTATGAAGAATGGTGTTTTGCAGGTGGCTATATTCATTTAAGAGACGGAGCCAACTCGCAGTATGCAACTAGCAGCGCTTTCTTGTTCAGTGTATACAGTGACTTGCTTGCCAAACATAAAGGCAAAGTTACTTGTGGTGACAAAACGTTTAGCTCTTCCCATCTCTTTTCTTTCGCTAAGCAACAAATGGATTACATTCTAGGGAAAAACCCACTAGGAAGATCGTACATGGTAGGATTTGGAAAGAACCCACCAACGCAACCTCACCATAGAGGTGCTTCGGTGCCGACACTGAAAAAGGGTGAAGAAAATGTGCCTTGTGGCATGACCTTCACAAAATGGTTTATGACAGATGAACCTAACCCTCATGAACTCACCGGTGCCATTGTGGGTGGAGCTGATCGCCAAGACAACTTCAAGGATAAACGTTGGGAGTCACCCTACACTGAACCATGCACCTACGTCAATTCCCTCGCTGCTGGAGTTCTTGCAAAGCTTGCTTCTTTGTCTTGA 1530 0.4418 MGNRQVLLAMIIAWLTLFEGNMMLVSGGLNYKEALTKSLIFLEAQRSGKLPSSNRVPWRGDSALDDGKLANVDLVGGYYDAGDNVKYGLPMAFTVTTLAWAAIFYKEEFKEAKEMDHLIDAIRWGTDYFLKASSRRKRLYVEVGDAEEDHKCWIPPEYMKTPRTVKKIGDGTSGSEIAAETAAAMAASSIVFRPKNRKYSRSLLNRAKTLFLMAKSHKGTYDGECPFYCSYSGYNDELMWAATWLYIATKRSIYLKYILEDSKSASVSEFSWDLKYAGAQVLLSQLYFDGEKKFVKFKYHAESFICSVLPDSPYHQITMSPGEYPLPLFVFAVLKMKEIYEEWCFAGGYIHLRDGANSQYATSSAFLFSVYSDLLAKHKGKVTCGDKTFSSSHLFSFAKQQMDYILGKNPLGRSYMVGFGKNPPTQPHHRGASVPTLKKGEENVPCGMTFTKWFMTDEPNPHELTGAIVGGADRQDNFKDKRWESPYTEPCTYVNSLAAGVLAKLASLS* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1340 509 SUPERFAMILY Six-hairpin glycosidases 30 506 IPR008928 GO:0005975
Vra5g1340 509 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 404 430 IPR018221 -
Vra5g1340 509 PANTHER ENDO-1,4-BETA-GLUCANASE 6 506 - -
Vra5g1340 509 Pfam Glycosyl hydrolase family 9 31 502 IPR001701 GO:0004553|GO:0005975
Vra5g1340 509 Gene3D - 332 509 IPR012341 GO:0005975
Vra5g1340 509 PANTHER ENDOGLUCANASE 16-RELATED 6 506 - -
Vra5g1340 509 Gene3D - 26 327 IPR012341 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1340 Vra-Chr5 20280966 20283864 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1340 21 507 Glycoside Hydrolase AT3G43860 63.265 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1340 K01179 - gmx:100811509 768.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1340 5 20280966 20283864 Vra5g1340 5 20280966 20283864 ECH