Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1339 ATGGGCTTAGTCTGCAGCAAAAGACGACGTTTTCGTGATGCTGATGCTGAAGAAAATGCTCAGGATGCCGAAATTGAAAGAAGAATCGAGTTAGAAACAAAGGCTGAAAAACATATTCAGAAACTTCTACTATTAGGTGCTGGAGAGTCTGGGAAGTCTACAATCTTTAAGCAGATAAAACTTTTGTTTCAAACTGGCTTCGACGATGCTGAGCTAAAAAGCTACATACCAGTCATTCATGCTAACGTGTTTCAGACAATAAAACTACTGCATGATGGGTCAAAAGAGTTAGCGCAGAATGATGCTGATTCTTCAAAGTACGTAATATCTAATGAAAACCAGGACATTGGGGAAAAGCTCTCAGAAATAGGAGGCAGGCTGGATTACCCGCGTCTTACCAAGGAGCTTGCGCAGGAAATTGAGACTCTGTGGGAAGATGCTGCAATTCAGGAAACATATGCCCGTGCTAATGAACTCCAAGTTCCAGATTGCACCCATTATTTCATGGAAAATTTGGAGAGACTGTCTGATGCAAATTATGTTCCGACAAAGGAGGATATTTTGTATGCAAGAGTTCGTACAACTGGTGTTGTCGAGATCCAATTCAGTCCTGTCGGAGAAAATAAGAGAAGTGGTGAAGTCTATAGACTCTTTGATGTTGGTGGCCAGAGAAATGAGAGGAGAAAGTGGATCCATCTTTTTGAAGGAGTTACAGCTGTAATATTCTGTGCTGCAATTAGCGAGTATGATCAAACACTTTATGAGGATGAAAACAAGAACAGAATGATGGAGACTAAGGAACTTTTTGAGTGGGTTCTGAAGCAACCATGTTTTGAGAAAACATCCTTCATGTTATTTTTAAACAAGTTTGACATATTTGAAAAGAAGATCCTGAAAGTTCCGCTCAATGTGTGTGAGTGGTTCAAAGAATACCAGCCAGTTTCAACAGGGAAGCAAGAGATAGAACACGCGTACGAGTTTGTGAAGAAAAAGTTTGAGGAATTGTATTTCCAGAGCATTGCTCCTGACCACGTAGATCGTGTGTTCAAGATATACCGGACCACTGCTCTTGATCAGAAGCTTGTGAAAAAGACTTTCAAGCTTGTTGACGAGACTTTGAGACGGAGGAATCTGTTTGAAGCTGGCTTATTATGA 1155 0.4069 MGLVCSKRRRFRDADAEENAQDAEIERRIELETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDDAELKSYIPVIHANVFQTIKLLHDGSKELAQNDADSSKYVISNENQDIGEKLSEIGGRLDYPRLTKELAQEIETLWEDAAIQETYARANELQVPDCTHYFMENLERLSDANYVPTKEDILYARVRTTGVVEIQFSPVGENKRSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLYEDENKNRMMETKELFEWVLKQPCFEKTSFMLFLNKFDIFEKKILKVPLNVCEWFKEYQPVSTGKQEIEHAYEFVKKKFEELYFQSIAPDHVDRVFKIYRTTALDQKLVKKTFKLVDETLRRRNLFEAGLL* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1339 384 PRINTS Plant G protein alpha subunit signature 27 36 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Vra5g1339 384 PRINTS Plant G protein alpha subunit signature 77 90 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Vra5g1339 384 PRINTS Plant G protein alpha subunit signature 92 106 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Vra5g1339 384 PRINTS Plant G protein alpha subunit signature 116 130 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Vra5g1339 384 PRINTS Plant G protein alpha subunit signature 200 215 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Vra5g1339 384 PRINTS Plant G protein alpha subunit signature 270 281 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Vra5g1339 384 PRINTS Plant G protein alpha subunit signature 319 334 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Vra5g1339 384 PRINTS Plant G protein alpha subunit signature 336 348 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Vra5g1339 384 CDD G-alpha 40 378 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vra5g1339 384 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 1 384 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vra5g1339 384 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN ALPHA-1 SUBUNIT 1 384 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Vra5g1339 384 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 381 IPR027417 -
Vra5g1339 384 ProSiteProfiles G-alpha domain profile. 38 384 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vra5g1339 384 SMART galpha_1 19 383 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vra5g1339 384 PRINTS Alpha G protein (transducin) signature 41 56 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vra5g1339 384 PRINTS Alpha G protein (transducin) signature 180 202 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vra5g1339 384 PRINTS Alpha G protein (transducin) signature 215 232 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vra5g1339 384 PRINTS Alpha G protein (transducin) signature 237 265 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vra5g1339 384 PRINTS Alpha G protein (transducin) signature 283 292 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vra5g1339 384 Gene3D - 68 193 IPR011025 GO:0007165
Vra5g1339 384 Gene3D - 41 372 IPR027417 -
Vra5g1339 384 SUPERFAMILY Transducin (alpha subunit), insertion domain 67 192 IPR011025 GO:0007165
Vra5g1339 384 Pfam G-protein alpha subunit 22 372 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1339 Vra-Chr5 20275348 20280833 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1339 K19729 - gmx:547804 733.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1339 5 20275348 20280833 Vra5g1339 5 20275348 20280833 ECH