Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1338 ATGAAATCTCCGACGAGGGAGGGACCAACCAAATTCATCAACATGCCTTCGTCATTCAACTTCGCCTGCATGTACAACAAGTACATCCGACGCTGTTTCACGGGGGCGGGCCTCTGGTCGCAGGCCCTCGCCCTTGACGACATGACCACCATGCACTTTTGGGGCCCAAGAAACAAAACGGCCCAGAAGCCCTCTCTGGTTCTCATCCACGGCTTTGGGCCCGTGGCATTGTGGCAGTGGCGCAGACAGGTCAAATCCCTGGCCCCACACTTCAACCTTTACGTTCCGGACCTCGTATTCTTCGGAGGCTCCACCACCATTTCCAGGGAGAGGAGCGAGGTGTTTCAGGCGAAGTCGGTGGGGAAGCTTCTGGATAAGTTGGAGGTGGAGACGTTGCACGTGGTGGGCACCAGCTACGGGGGCTTGGTCGCTTACAATCTGGCCAAGATGATGGGGGAAGGGAGGGTGAAGAAAGTGGTCATCGCCAGCTCCGGCGTTAACATGACCGCGAGAAGTAACCTAGAGATGCTCCGAAGTTCTAAATTGAACAGCATCGACGACCTCATGTTTCCTTCTTCCCCCCACCACCTGCGGCAGTTGATGTCCCTCTCCATCTACAAGCCTCCCCATGTCCCTGATTTTGTCCTCAGTATCTTCATCCATGAATTGTACGGAGAGAATAAGGAGAGAAAATTGGAAATTCTAAAAGGGATCTCTGTGGGCAGGGAAGAAACCTCTAACGTTTCACCTCTTAAACAGGAAGTTCTGATAGTGTGGGGGGAAGAAGACCGGGTTTTTCCGGTGCGATTGGCGCATGAACTGAAAGAGGTGATAGGTAAAAATGTAAAATTAGAACTGATAAAGGAAGCAGCACATGTGCCTCAAATTGAAAAGCCAGTAGAATTCAACCGCATCATCATTAATTTTTTACGGGGGACTCCTTGA 945 0.5143 MKSPTREGPTKFINMPSSFNFACMYNKYIRRCFTGAGLWSQALALDDMTTMHFWGPRNKTAQKPSLVLIHGFGPVALWQWRRQVKSLAPHFNLYVPDLVFFGGSTTISRERSEVFQAKSVGKLLDKLEVETLHVVGTSYGGLVAYNLAKMMGEGRVKKVVIASSGVNMTARSNLEMLRSSKLNSIDDLMFPSSPHHLRQLMSLSIYKPPHVPDFVLSIFIHELYGENKERKLEILKGISVGREETSNVSPLKQEVLIVWGEEDRVFPVRLAHELKEVIGKNVKLELIKEAAHVPQIEKPVEFNRIIINFLRGTP* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1338 314 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 19 310 - -
Vra5g1338 314 PRINTS Alpha/beta hydrolase fold signature 90 105 IPR000073 -
Vra5g1338 314 PRINTS Alpha/beta hydrolase fold signature 134 147 IPR000073 -
Vra5g1338 314 PRINTS Alpha/beta hydrolase fold signature 255 269 IPR000073 -
Vra5g1338 314 Pfam alpha/beta hydrolase fold 64 175 IPR000073 -
Vra5g1338 314 PANTHER SI:DKEY-122A22.2 19 310 - -
Vra5g1338 314 SUPERFAMILY alpha/beta-Hydrolases 62 311 IPR029058 -
Vra5g1338 314 Gene3D alpha/beta hydrolase 34 313 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1338 Vra-Chr5 20269185 20271383 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1338 251 310 Acyl Lipid Metabolism Gene Families AT3G10840 45.000 7.83e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1338 - - gmx:100812592 454.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1338 5 20269185 20271383 Vra5g1338 5 20269185 20271383 ECH