Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1333 ATGAACTTATCCAAGAAAGGATCCCAAACGGATGCAAAGCTATTAAGCCCAAACAAGGCAACAACTCTGAATCCAAATGCAGCAGAGTTTATTCCTTTTGCCCTCAGATCATCATCATTACCTGGAACTACCAGCTCGGTAGATGCAACAGCAGGGCTTTCGGCTGCTGGAGCTCTTGGGAAAGCAGTTTTAGATAGATCAGAATCATCCATTTCAAATAATTCTGATGATGAGGTGCATCAATACTGGCGATGTCAGCTCCCTGATGATATTACCCCTGATTTCAAGGTCATGGGAGAAGATGAATCTCAAGGTCTAGATGATCTTCCTTTAGCAGGTTTATCCATACATGAGGACAATGAAGCCTCCAGGTTTCCTTCTTCCAAAGGAAGTAAATATATAATAAATGAGCAGGAGGAAATATCTCAACTGCATAATAATGGCAATAGCTTTGTGGATAAAATAGGGTTTTCCCATTCAAGCTACAGGGAGGACCCATCTTCTACGAGCTTTTTGAATGCTCTGGCAAAGCCTTGGGAGGGGCCAATTGGGAGCGCTGACCAGCTTGTTAGCAGTGGTCAAGAGGGGCTTGCTTATGATGATAACAGTGGACATGGATACTTAAATGATGTTTTGGCTGAAAATACAATTATGGATGATACTGATATGAATCCTTTGGAGTATTTAGCTTCCATGTTCCCTGGTTTTGCAGCAGAAAGCCTCGCAGAAGCTTACTTTGCCAATGGATGTGACTTACATCTGACCACCGAGATGCTCAGTCAATTAGAGCTTCAAGTTGATGGTGGTTTCAATCAAACTTTGAATTCAAAGACTCTGTCAGCTCCCAATCTGAGTGCAATGGACTTTCCTGCACTTACTTCACCAGATGGCCAGGCTGCTTCAGTTAAATACGTGGTTGATAATGTCCAGCAAAGTCGAAATCCTTACCAGTCATTTGACAGTGATGTGATGCTTTTCAAATCTAGCTCTTCAGTTCCATCTAGAGGTGCTGTTGACTTTGCTTCAGCTGTTAGAAAGTTGGCTTCTCAGGATTCTGGTGGTATTTGGAAGTATGACAAGAATGGCTCTGGTGATGCTGCTATAGGTTCAAGTAGGAACTCAAATGTTTTGGGTAGTGGCTACAATGGTGGACAGGCCAGAGCACACTTTGGTGATCGATTGCAGAACCGTGGCTCAGCTCGAGCAGCTCCTATTTGGCTTGAAACTGGTGATGCCGTTGCAAATATGTATTCAGAGCTGCGGGAAGAGGCTCGTGATCATGCATGCTTACGTAATGCATATTTTGAGCAGGCTCGTCAGGCTTACCTTATTGGTAATAAAGCCCTGGCAAAGGAACTAAGTGCTAAAGGGCAGCTTCACAACATGCATATGAAGGCAGCTCATGGAAAAGCTCAAGAATCCATTTACCGTCAGAGAAATGCAGTTGCTTCAGAGATGCAGGGCAATGGAAGAGGACACGAGAGGATAATAGACCTACATGGGTTGCATGCGGGTGAAGCCATTCATGTGCTGAAACACGAGTTGAGTGTGCTGAAAAGCACTGCCATAGCTGCTGAGCAGCGTTTGCAGGTGTATATTTGTGTGGGCACAGGTCATCATACCAGGGGTTCCCGCACTCCCGCAAGACTTCCAATAGCTGTACAGCGTTTTCTTCTTGAAGAGGGCATTGACTTCACGGAACCTCAGCCAGGCCTACTTCGCGTTGTGATATATTGA 1737 0.4479 MNLSKKGSQTDAKLLSPNKATTLNPNAAEFIPFALRSSSLPGTTSSVDATAGLSAAGALGKAVLDRSESSISNNSDDEVHQYWRCQLPDDITPDFKVMGEDESQGLDDLPLAGLSIHEDNEASRFPSSKGSKYIINEQEEISQLHNNGNSFVDKIGFSHSSYREDPSSTSFLNALAKPWEGPIGSADQLVSSGQEGLAYDDNSGHGYLNDVLAENTIMDDTDMNPLEYLASMFPGFAAESLAEAYFANGCDLHLTTEMLSQLELQVDGGFNQTLNSKTLSAPNLSAMDFPALTSPDGQAASVKYVVDNVQQSRNPYQSFDSDVMLFKSSSSVPSRGAVDFASAVRKLASQDSGGIWKYDKNGSGDAAIGSSRNSNVLGSGYNGGQARAHFGDRLQNRGSARAAPIWLETGDAVANMYSELREEARDHACLRNAYFEQARQAYLIGNKALAKELSAKGQLHNMHMKAAHGKAQESIYRQRNAVASEMQGNGRGHERIIDLHGLHAGEAIHVLKHELSVLKSTAIAAEQRLQVYICVGTGHHTRGSRTPARLPIAVQRFLLEEGIDFTEPQPGLLRVVIY* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1333 578 SUPERFAMILY SMR domain-like 495 576 IPR036063 -
Vra5g1333 578 SMART SMR_2 494 578 IPR002625 -
Vra5g1333 578 ProSiteProfiles Smr domain profile. 497 578 IPR002625 -
Vra5g1333 578 CDD CUE_CID7_like 224 265 IPR041806 -
Vra5g1333 578 MobiDBLite consensus disorder prediction 1 21 - -
Vra5g1333 578 Pfam Domain of unknown function (DUF1771) 417 480 IPR013899 -
Vra5g1333 578 SMART DUF1771_2 416 481 IPR013899 -
Vra5g1333 578 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 7 1 578 - -
Vra5g1333 578 Gene3D - 464 577 IPR036063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1333 Vra-Chr5 20245235 20250819 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1333 - - vun:114164614 1105.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1333 5 20245235 20250819 Vra5g1333 5 20245235 20250819 ECH