Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1328 ATGGCAGCGGAAGACAAGTGGTGCGTGGTGACCGGAGGCAGGGGTTTCGCCGCCCGGCATTTGGTGGAAATGTTAATCCGGCACAACGAATACTCCGTCCGCATCGCCGATTTGGAAGACAGCATTGTTCTCGAGCCCGCTGAACAGTTGGGGCTTCTCGGCCAGGCCTTGCACTCTGGCCGGGCCCAATACGTCTCTCTCGATCTTCGCAACAAGGCTCAAGTGCTAAAAGCATTAGAAGGAGTTGAAGTTGTGTTCCACATGGCTGCTCCAAACTCTTCCATTAACAACTACCAGCTTCATTATTCCGTCAATGTGCAAGGGACAAAGAATGTCATCGATGCTTGCGTGGAGCAGAAGGTCAAGCGACTCATTTACACCAGCTCTCCCAGCGTTGTTTTCGATGGCGTTCATGGGATTCATAATGGTGACGAAACAATGCCTTATACACCTTCGCCTAATGATCATTACTCAGCTACGAAAGCCGAGGGTGAAACATTGGTTATTAAAGCTAATGGGACTAATGGGCTCTTAACGTGCTGCATACGCCCTAGCAGCATTTTTGGGCCCGGTGACAGACTGTTGGTGCCTACGCTAGTTGATACTGCCAGAAAAGGGAAATCTAAGTTCCTTATTGGCGATGGGAATAACATTTATGATTTCACGTATGTTGGAAATGTGGCTCATGCCCATATATGTGCAGAACGGGCTCTGGCTTCAGAAGGGCCAGTTTCAGAAAAAGCTGCTGGAGAGGCATATTTCATAACAAATATGGAGCCTATGAAATTTTGGGAATTCGTGTCAGTGGTATTGGATAGTCTTGGATATGAAAGGCCAAGAATAAAGATCCCTAGCGTTGTTATCTTGCCCATTGCGCATTTGGTAGAGTGGATATATAGGCTGCTTGGCCCATATGGGATGCCAGTGCCTCAGTTAACTCCTTCAAGGATAAGACTCGTGACCTGCAGCAGAACTTTTGATTGCTCAAAAGCAAAGGATCGCCTTGGCTATGCCCCCATCGTAAAAATGCAGGAGGGCCTAAAGAGGACAATTGAATCATATGCACACTTGAAGGCAGAAAATCAACCTAAAACTAAAAGAGAAGGTCCCTCAAAAGCTTCCAAATATCTTGGAAGTGGAAGAGTTGCTGACACGTTGCTTTGGAAGGATAAAAAGCAAACTCTCATCACATTGTTTGTCTTCATTGCAATATACTTCAATTTCATTGCATCAGAAAATACCATCATTAGTGCTCTGACAAAGCTTCTATTGTTTGCATCGATCTTTTTATTCATCCATGGCATTCTACCTGCAAAAATGTTGGGATATACTGTTGAGAAAATGCCCAAGTCATGGTTTCACTTGTCAGAAGATAGGTCACATAAATTTGCTCTCTCAGTGGCCTCATCATGGAATATTGCTGTTAATGTTTTGAAGTCCCTTGCAGAAGGGAATGATTGGGTACTGTTATTAAAGGTTGTTCTCTCTCTGTTCATTCTTAGCTTCCTTGGAGCCTTTTCACTTCAGAACTTGTATACTATAGGAGTTACGTTTGCATTTATAGCTTTCTACGTATACGAACAGAAGGAGGAAGACATTGATGGCATATTTATAAAAACACATTCTTTTAGTTGCAAATTGAAATCTGATCTCACCAAAAAGTTTCTTTCTTCAAAGAAGATTGATTGA 1689 0.4352 MAAEDKWCVVTGGRGFAARHLVEMLIRHNEYSVRIADLEDSIVLEPAEQLGLLGQALHSGRAQYVSLDLRNKAQVLKALEGVEVVFHMAAPNSSINNYQLHYSVNVQGTKNVIDACVEQKVKRLIYTSSPSVVFDGVHGIHNGDETMPYTPSPNDHYSATKAEGETLVIKANGTNGLLTCCIRPSSIFGPGDRLLVPTLVDTARKGKSKFLIGDGNNIYDFTYVGNVAHAHICAERALASEGPVSEKAAGEAYFITNMEPMKFWEFVSVVLDSLGYERPRIKIPSVVILPIAHLVEWIYRLLGPYGMPVPQLTPSRIRLVTCSRTFDCSKAKDRLGYAPIVKMQEGLKRTIESYAHLKAENQPKTKREGPSKASKYLGSGRVADTLLWKDKKQTLITLFVFIAIYFNFIASENTIISALTKLLLFASIFLFIHGILPAKMLGYTVEKMPKSWFHLSEDRSHKFALSVASSWNIAVNVLKSLAEGNDWVLLLKVVLSLFILSFLGAFSLQNLYTIGVTFAFIAFYVYEQKEEDIDGIFIKTHSFSCKLKSDLTKKFLSSKKID* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1328 562 Gene3D - 1 359 - -
Vra5g1328 562 ProSiteProfiles Reticulon domain profile. 382 534 IPR003388 -
Vra5g1328 562 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 355 IPR036291 -
Vra5g1328 562 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 9 283 IPR002225 GO:0003854|GO:0006694|GO:0016616
Vra5g1328 562 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 4 384 - -
Vra5g1328 562 Pfam Reticulon 382 537 IPR003388 -
Vra5g1328 562 PANTHER 3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1 4 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1328 Vra-Chr5 20186740 20194818 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1328 9 358 Lipid Metabolism Gene Families AT2G33630 33.062 9.97e-48 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1328 K23558 - gmx:100816854 1017.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1328 5 20186740 20194818 Vra5g1328 5 20186740 20194818 ECH