Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1327 ATGAATTGGGACGAGAAAGATGAATTTGAGATCCCTCTTACTCAAACGGCAATGGCTTTTCACGAGCTCGCTTCCGTCGACAACAATCAACGGCCATTGAAGAAACCAAAACGCAAAACGACGGCGCTTCGTGGCAGTGGCAAGGAGAACGCCCGACCCAGCGAGGGCTGCGAAATTCTGAACTGCAGCTTGGATTTCATTCCTTCCTCCCTAGATTGCATTTCGGTTTGCAGCGTTCAACAATCTGAACAAGACGATAGTGATTCTTCTTCCGCGTCTTTATCGGAGCTGAAACAGAAGGGGAATTATCTTCACAACTCGATAGAGTCGAAGCTGTTGGTTTCGAGAACCGGCGAGCTTAACGCTACAGATGCAGATTCTGATTCGGAGCTTGGTCTGTTGATGAATTTGTGCGACGAGTTGGAGGAAGTAGATAGTTCCGTTCGGTGTCCCCTTTGTGATGTTGATATTTCGAATTTGACTGAGGAACAGAGACATCTTCATACCAATAATTGTCTTGACAAAAGCGATAACGTTGCGGTTCCAGAAGACGATATGGGTGCTCCACATGTGCCAAAAGTCGCTTCTGTTGTTGATTGGCTTCACGGGCTCGGTTTGGGAAAGTATGAAGTGATTTTCGTTAGGGAAGAAGTTGATTGGAACACCTTGCAATGGCTCACAGAAGAGGATCTCTTAAGCATGGGTATCACTGCATTTGGGCCAAGAAAAAAGATTGTGCATGCCCTGTGTGAACTAAGAAAAGGAGATGCCACTGCAAATGAGAAACAAAGGGGTTCGTTGGCGGAGCCTGTAAGGATTAGAAACCAGAAAGTCAAATTAAAGCGTGACAAATCTGAAAGAAAAACTGACGGCTCTATTAAACCAGCAGCAAACAAATTAATTACTGAATATTTTTCGGGGTTTGCTTCCAAAGAAAAGAAAGTTTCTGCTTCTCCTGGAGAACAAAAGGAAATGAAAAACAGTGACTTGGACTCTGGTCGTAAGCACAAATCAAAAAATGTGACAACAAATAGAAAGCTCCGTGATGTTCCCAAATGGTGTTCTGTACAAGGAACGCCTTTCCGAGTGGATGCTTTCAAATATCTCAGAGGAGATTGTTCCCACTGGTTTCTCACACACTTTCACTTGGACCATTATCAAGGTCTTACCAAGTCATTCAATCATGGAAAGATTTATTGCTCCTCCATTACGGCTAGATTAGTAAATACGAACATTGGAATTTCATATGATAAATTACATGTTTTGCCTCTGAACCAAAAGATGGAAATAGCCGGTGTTGATGTGACTTGCTTTGATGCCAACCACTGTCCAGGTTCCATAATCATTCTCTTTCAACCTCCTAATGGTAAGGCTGTGCTGCACACGGGTGATTTCCGGTTTAGTGACGAAATGACAATTAATCCTTTACTCAAGATGTGTCCTATCAATACTCTAATTCTTGATACAACATACTGCAATCCACAGTATGACTTTCCGAAACAAGAGGCTGTAATACAATTCGTCATTGATGCCATTCAAGCAGAAACTTTTAATCCCAAGACTCTTTTCCTGATCGGCAGCTATACCATAGGAAAAGAAAGGATATTCTTGGAGGTTGCTCGCGCGCTTAGTAAAAAGGTTCACGTGACTGCGGCAAAATTGCGTCTTTTAAATTGTTTGGAATTTAAGGAGGAGGATATGCAGTGGTTCACTTCAAATGAACATGAAAGCAACATTCATGTTGCCCCTATGTGGACGCTCGCAAGCTTCAAAAGATTGAAGCAAATATCAAGTCAATATAAGGATCGGTACAATCTTATAGTTGCTTTCTCCCCCACTGGTTGGACGTTTGGCAAAGGTAAAAAGAAGTCTCCCGGAAGAAGATGGCAGCAGGGTACTATTATAAGGTATGAAGTACCTTACAGTGAGCATAGCAGCTTTACAGAACTCAAAGAGTTTGTAAAACTTGTATCTCCTAGCAACATTATACCAAGTGTGAATAACGATGGACCAGAATCTTCTGATGCAATGATTTCTCTATTGTTATCTTGA 2052 0.4215 MNWDEKDEFEIPLTQTAMAFHELASVDNNQRPLKKPKRKTTALRGSGKENARPSEGCEILNCSLDFIPSSLDCISVCSVQQSEQDDSDSSSASLSELKQKGNYLHNSIESKLLVSRTGELNATDADSDSELGLLMNLCDELEEVDSSVRCPLCDVDISNLTEEQRHLHTNNCLDKSDNVAVPEDDMGAPHVPKVASVVDWLHGLGLGKYEVIFVREEVDWNTLQWLTEEDLLSMGITAFGPRKKIVHALCELRKGDATANEKQRGSLAEPVRIRNQKVKLKRDKSERKTDGSIKPAANKLITEYFSGFASKEKKVSASPGEQKEMKNSDLDSGRKHKSKNVTTNRKLRDVPKWCSVQGTPFRVDAFKYLRGDCSHWFLTHFHLDHYQGLTKSFNHGKIYCSSITARLVNTNIGISYDKLHVLPLNQKMEIAGVDVTCFDANHCPGSIIILFQPPNGKAVLHTGDFRFSDEMTINPLLKMCPINTLILDTTYCNPQYDFPKQEAVIQFVIDAIQAETFNPKTLFLIGSYTIGKERIFLEVARALSKKVHVTAAKLRLLNCLEFKEEDMQWFTSNEHESNIHVAPMWTLASFKRLKQISSQYKDRYNLIVAFSPTGWTFGKGKKKSPGRRWQQGTIIRYEVPYSEHSSFTELKEFVKLVSPSNIIPSVNNDGPESSDAMISLLLS* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1327 683 MobiDBLite consensus disorder prediction 315 342 - -
Vra5g1327 683 Pfam DNA repair metallo-beta-lactamase 565 669 IPR011084 -
Vra5g1327 683 PANTHER DNA CROSS-LINK REPAIR 1A PROTEIN 148 679 - -
Vra5g1327 683 SUPERFAMILY Metallo-hydrolase/oxidoreductase 361 665 IPR036866 -
Vra5g1327 683 SUPERFAMILY SAM/Pointed domain 193 254 IPR013761 -
Vra5g1327 683 MobiDBLite consensus disorder prediction 26 53 - -
Vra5g1327 683 Pfam SAM domain (Sterile alpha motif) 193 251 IPR001660 GO:0005515
Vra5g1327 683 Gene3D - 190 258 IPR013761 -
Vra5g1327 683 ProSiteProfiles SAM domain profile. 192 255 IPR001660 GO:0005515
Vra5g1327 683 SMART SAM_4 189 255 IPR001660 GO:0005515
Vra5g1327 683 Gene3D - 497 644 - -
Vra5g1327 683 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 148 679 - -
Vra5g1327 683 Gene3D - 357 666 IPR036866 -
Vra5g1327 683 Pfam Beta-lactamase superfamily domain 377 496 IPR001279 -
Vra5g1327 683 MobiDBLite consensus disorder prediction 316 342 - -
Vra5g1327 683 CDD SAM_superfamily 196 249 - -
Vra5g1327 683 CDD SNM1A-1C-like_MBL-fold 337 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1327 Vra-Chr5 20180675 20186644 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1327 195 249 Glycosyltransferase AT3G07170 47.273 4.67e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1327 K15340 - gmx:100816321 1131.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1327 5 20180675 20186644 Vra5g1327 5 20180675 20186644 ECH