Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1325 ATGGCCAGTGAACGTGATCTGTTCTCGGCGGAGATTGTGAACCGTGGGATTGAGTCTTCTGGGCCAAACGCTGGGTCCTTGACCTTCTCCGTCAGGGTTAGGAGGCGTTTGCCGGATTTTCTTCAGTCCGTTAACCTCAAGTACGTTAAATTGGGTTACCATTATCTGATAAACCATGGCATATACTTGTTGACCATACCTGTTCTTCTGGTGGTCTTCAGTGCTGAGGTTGGAAGCCTCAGCAAAGAAGACCTTTGGAAGAAGCTTTGGGAAGATGCGCGTTACGACCTTGCCACTGTTCTTGCTTCCTTTGGGGTCTTCGTCTTCACTTTGTCTGTTTACTTCATGTCACGCCCTCGACCCATTTACCTCATTGATTTTGCATGCTTTAAACCAGATGATGAACTCAAGGTGTCAAGGGAGGAGTTGATGGAAGTGGCCAGAAAATCAGGGAAGTTCGACGAAGAGAGTCTTCAATTCCAAAAGAGGATGTTAATGTCCTCCGGCATCGGAGATGAAACCTACATCCCCAAAGCCGTCATGGCCTCCTCCGAGAACACCGCCACCATGAAGGAGGGTCGTGCAGAGGCCTCCATGGTCATGTTCGGAGCCCTGGACGAGCTCTTCGAGAAAACCCGTGTCCGACCCAAGGATGTGGGCGTTCTGGTTGTCAACTGCAGCATCTTCAACCCCACTCCGTCGCTGTCAGCCATGATCATCAACCACTACAAGATGCGGGGGAACATCCTCAGCTACAACCTCGGAGGAATGGGGTGCAGTGCTGGGGTCATAGCCGTTGACTTGGCTAAGGATATTCTGCAAGCAAACCCTAATAACTACGCGGTGGTGGTCAGCACTGAGATGGTGGGCTACAACTGGTACCAGGGCAAGGACAGGTCCATGCTCATTCCTAACTGTTTTTTCCGCATGGGTTGCTCCGCCGTCTTGCTCTCCAACCGCCGCCGGGACTACAGCCGAGCCAAGTACCGTCTTGAGCATATTGTTCGAACACATAAGGGTGCTGATGACCGTAGCTTCAGGTGTGTATACCAAGAAGAAGATGAGCAGAAACTGAAGGGACTAAAGATCAGCAAAGACTTGATTGAGATTGGTGGTGATGCTCTAAAGACCAACATCACCACACTAGGACCCTTGGTGCTACCATTTTCTGAGCAGCTTCTGTTCTTTGGGACCCTTGTGTGGAGGCACCTATTTGGGAGCAAAACTGATGGGAGTTCTCCATCAATGAAGAAGCCATACATTCCTGACTACAAACTGGCTTTTGAGCACTTCTGTGTGCATGCTGCAAGCAAGACCATTCTTGATGAGCTTCAGAGGAACTTGGAGCTGAGCGACAAGAACATGGAGGCATCAAGGATGACACTGCAGCGCTTTGGCAACACCTCTAGCAGCAGCATTTGGTATGAGCTGGCTTACATGGAAGCAAAAGAGAGTGTGAGAAGAGGAGACCGTGTTTGGCAACTTGCTTTTGGGTCTGGCTTCAAGTGCAACAGTGTCGTGTGGCGTTCCATGCGTAGAGTCACCAAGCCTTCAAGGAACCCTTGGCTTGACTGCATCAACAGATATCCTGCAACTCTCAACTGA 1605 0.5028 MASERDLFSAEIVNRGIESSGPNAGSLTFSVRVRRRLPDFLQSVNLKYVKLGYHYLINHGIYLLTIPVLLVVFSAEVGSLSKEDLWKKLWEDARYDLATVLASFGVFVFTLSVYFMSRPRPIYLIDFACFKPDDELKVSREELMEVARKSGKFDEESLQFQKRMLMSSGIGDETYIPKAVMASSENTATMKEGRAEASMVMFGALDELFEKTRVRPKDVGVLVVNCSIFNPTPSLSAMIINHYKMRGNILSYNLGGMGCSAGVIAVDLAKDILQANPNNYAVVVSTEMVGYNWYQGKDRSMLIPNCFFRMGCSAVLLSNRRRDYSRAKYRLEHIVRTHKGADDRSFRCVYQEEDEQKLKGLKISKDLIEIGGDALKTNITTLGPLVLPFSEQLLFFGTLVWRHLFGSKTDGSSPSMKKPYIPDYKLAFEHFCVHAASKTILDELQRNLELSDKNMEASRMTLQRFGNTSSSSIWYELAYMEAKESVRRGDRVWQLAFGSGFKCNSVVWRSMRRVTKPSRNPWLDCINRYPATLN* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1325 534 Coils Coil 441 461 - -
Vra5g1325 534 PANTHER 3-KETOACYL-COA SYNTHASE 10 4 531 - -
Vra5g1325 534 CDD CHS_like 98 508 - -
Vra5g1325 534 Gene3D - 122 511 IPR016039 GO:0016746
Vra5g1325 534 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 429 509 IPR013747 -
Vra5g1325 534 Pfam FAE1/Type III polyketide synthase-like protein 114 403 IPR013601 GO:0006633|GO:0016020|GO:0016747
Vra5g1325 534 SUPERFAMILY Thiolase-like 332 510 IPR016039 GO:0016746
Vra5g1325 534 PANTHER 3-KETOACYL-COA SYNTHASE 4 531 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vra5g1325 534 SUPERFAMILY Thiolase-like 108 326 IPR016039 GO:0016746
Vra5g1325 534 PIRSF Very_long_ch_3-ktacl-CoA_syn 39 534 IPR012392 GO:0006633|GO:0016020|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1325 Vra-Chr5 20149955 20154737 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1325 2 533 Miscellaneous Gene Families AT2G26250 76.770 0.0 889
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1325 K15397 - gmx:100778487 1036.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1325 5 20149955 20154737 Vra5g1325 5 20149955 20154737 ECH