Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1322 ATGCTTGTCTCGGGAGTCTCCTCATCATCATGGGATCTCAAATGGCTCCTGCAATTCGTCTTCTCCGCGTTCGTCTTGGCGATGGGGTTGCACGCGCTCGTGAAGAACACCGCCTCCAAGTACTTCGAGGTTGACGCCACTTTCGAAGGGGAACAACACCAACACCAGCACCACCACCACAACCAACGCCAAGACGCCATGCCTGGTCTTCTCATGGACGATTCTGTCTGCGCCGTTTGTCGCAACCCCGGCAGCAAGAAGTGTTCGCGATGCAAATCCGTTCGTTACTGTTCACAAGCATGCCAACAGGCGCACTGGAAATCGGACCATAAGATGAGGTGCAAGGAGTTTCAAAAGCAAGGAGTTTCACAATCTGGATTAATTAATCGAGGGTTCAAAGCTTCAGCTGCTGTGAATAGAAGTACGACATCAATTGCTCTCATTCCCGAATGTGGTCGCGGAATTTCCAGGCCTATCAAGCAGCTTAAGGATGTTCTTTTTCCTTATGTTGATTTTGTCAATTTGTTTAACTGGGACAAGCCAGGATTTCCTCCCTGTGGACTGTTAAATTGTGGAAACAGCTGCTTTGCAAATGTGGTTCTTCAATGCCTCTCTTTCACAAGGCCACTTATTGCCTACCTATTGGAGAAGGGGCACCGCAGTGAATGCTGTCATAATGATTGGTGCTTTCTATGTGAATTTGAAACCCATGTTGAAAAAGTAAGGCTAAGTTCTAAAGCGTTTTCTCCAATGAATATTCTGTCTCGTTTGCCTAATATTGGTGGTACACTGGGTTATGGAAGACAAGAGGATGCACACGAGTTCATGAGGTTTTCCATTGATGCCATGCAATCAGTTTGCCTTGATGAATTTGGTGGGGAAAAAGCTGTTCCTCCAAAGCTTCAGGAAACAACTCTTATCCAACACATTTTTGGTGGCCACCTTCAATCTGAGGTGATTTGTACCGAATGTGAGAAGAATTCTAATCAGTATGAAAATATGATGGATTTGACAGTTGAAATTCATGGAGATGCTGCTTCTGTGGAGGAATGTCTGGACCAGTTTACTGCCAAAGAGTGGCTTCATGGGGATAATATGTATAAATGTGACGGGTGCAAGGGCTATGTGAAGGCATGGAAACGTCTCACAGTTAAACGAGCTCCAAATATTCTTACAATTGCCTTGAAAAGATTTCAGAGTGGGAGGTTTGGGAAACTTAACAAGAGAGTAGCTTTCCCAGAGACTTTAGACCTTAGCCCTTACATGAGTGAAGTTGGAGATGGATCTGATATTTACAAGCTATACGCTGTCGTGGTACATATTGATATGCTAAATGCTTCATTTTTTGGTCATTACATCTGCTACATCAAGGATTTCAGTGGGAACTGGTATAGAATAGATGATTGGAAGGTCGTTGGAGTGGAGTTGGAAGAGGTGCTTTCTCAGAGCGCTTATATGCTGTTGTATAGCAGGGTTCATGCTCGAGCTTCAGGACTTCAAAGTATAGTCTCTTCAGAGACAGCAGAAGTGCAGCCTAGCTCAACTGAACATGCTGAATGCCTCCCGGAATCGAGAACTGAGACTGACAGTGGAGGATGTGAGTCCTCTCCATCTAACAGTAGTCCAGAATTTATGGTTCCCTGCGAAAACATGCCTTTGAGTGAAATAAACTCCGAAGTTAAAAGAGAGCAGTCGAAGGATGTTGAAATTATTGAGGTAAATGGTAATGACTCTGTCTGTAACGGTGTTGAATCATCGTATATGCACGGTTCTGAAGCTGATAAAGATATGGTGGACGTAGAAGATTCGGATGGATCAAATACATGCTCATCTGTTTTAGAAGAGATTTCAGTCTGCATGGAAGAGCAAGATGACAGTGATTTGGCTAAGTCGAGTCCTACTTCGTCTTTGCCTAATAAATACTCTTGTGTTTCAGTGGATTATGAAAATGCAAGGGAAAATTCAGATTCAAAGCAGCCGGTAGATACGATTAAAAGCATGGTAACAGCAAATGGCTTTGCAGATCATAGCAACGGTTATGTGAATGCAAACAAATATGATGATGTCCCAGTGGAAGACTGTGATGATTCTTTTTTGACTGAAACAACAACCTCCGACAAACATGAAGATGACAAAGGAAACAGAGTTAAGGAAGTGGAAATATGA 2166 0.434 MLVSGVSSSSWDLKWLLQFVFSAFVLAMGLHALVKNTASKYFEVDATFEGEQHQHQHHHHNQRQDAMPGLLMDDSVCAVCRNPGSKKCSRCKSVRYCSQACQQAHWKSDHKMRCKEFQKQGVSQSGLINRGFKASAAVNRSTTSIALIPECGRGISRPIKQLKDVLFPYVDFVNLFNWDKPGFPPCGLLNCGNSCFANVVLQCLSFTRPLIAYLLEKGHRSECCHNDWCFLCEFETHVEKVRLSSKAFSPMNILSRLPNIGGTLGYGRQEDAHEFMRFSIDAMQSVCLDEFGGEKAVPPKLQETTLIQHIFGGHLQSEVICTECEKNSNQYENMMDLTVEIHGDAASVEECLDQFTAKEWLHGDNMYKCDGCKGYVKAWKRLTVKRAPNILTIALKRFQSGRFGKLNKRVAFPETLDLSPYMSEVGDGSDIYKLYAVVVHIDMLNASFFGHYICYIKDFSGNWYRIDDWKVVGVELEEVLSQSAYMLLYSRVHARASGLQSIVSSETAEVQPSSTEHAECLPESRTETDSGGCESSPSNSSPEFMVPCENMPLSEINSEVKREQSKDVEIIEVNGNDSVCNGVESSYMHGSEADKDMVDVEDSDGSNTCSSVLEEISVCMEEQDDSDLAKSSPTSSLPNKYSCVSVDYENARENSDSKQPVDTIKSMVTANGFADHSNGYVNANKYDDVPVEDCDDSFLTETTTSDKHEDDKGNRVKEVEI* 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1322 721 Pfam Ubiquitin carboxyl-terminal hydrolase 186 489 IPR001394 GO:0004843|GO:0016579
Vra5g1322 721 MobiDBLite consensus disorder prediction 528 545 - -
Vra5g1322 721 Pfam MYND finger 77 114 IPR002893 -
Vra5g1322 721 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 187 202 IPR018200 GO:0004843|GO:0006511
Vra5g1322 721 ProSiteProfiles Zinc finger MYND-type profile. 77 114 IPR002893 -
Vra5g1322 721 MobiDBLite consensus disorder prediction 700 721 - -
Vra5g1322 721 SUPERFAMILY HIT/MYND zinc finger-like 74 118 - -
Vra5g1322 721 MobiDBLite consensus disorder prediction 506 545 - -
Vra5g1322 721 Gene3D Cysteine proteinases 182 501 - -
Vra5g1322 721 ProSitePatterns Zinc finger MYND-type signature. 77 114 IPR002893 -
Vra5g1322 721 SUPERFAMILY Cysteine proteinases 182 494 IPR038765 -
Vra5g1322 721 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 186 492 IPR028889 -
Vra5g1322 721 CDD Peptidase_C19E 185 490 - -
Vra5g1322 721 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 22 684 - -
Vra5g1322 721 Gene3D - 52 120 - -
Vra5g1322 721 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 22 684 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1322 Vra-Chr5 20121368 20126718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1322 12 539 Miscellaneous Gene Families AT4G31670 61.437 0.0 653
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1322 K11855 - gmx:100810577 1114.75