Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1320 ATGAACAACTCTTTGGTTGTAGCTGCACAAGATGGTGACGTAGACTTGCTCTACAAGCTCATTCACATGCAACCCTACGTGCTGGAACACACCGACTTCATGCCATTCGTTGACACTCCACTGCATGTTGCAGCTGCTGCAGGACATGCCAGTTTTGCCACTGAGGTCATCAGACTCAAACCCTCCTTTGCATGGAAGCTCAACCAGTGTGGCCTCAGCCCCATGCATCTTGCGTTGCAGAACAATCATCACAGATTGGTGTGTCGCTTTGTGGAGATCAACAAGGACCTCGTCAGGATCAAAGGGAGAGAGGGTCTCACTCCTTTGCATGTTGCAACTCAAACTGGGAGAATCGATCTTGTGGCAAAATTCTTATCTGCTTGTCCAGATTCCATCGAAGATGTAACTGTTCGAAGTGAAACCGCGCTGCATATTGCTGTGAAATATAACCAGTTTCCGGCTTTGGAGGTCTTAGTTGGATGGCTCCAGAGAAACTGCCAAAGACACGCTCAGAACCGCGAGAGAAGAATTCTGAACTGGCAGGACGAAGCAGGCAACACAGTTCTCCACCTTTCTGTTCTCAAAATCTTCCCTCAGGCAGTTAAGTTGTTGTTAGACAGCAACATAGACATAAATGCCAAGAACTTTGAGGACTCGACAGCGTTGGACATAGTAGAGATTAACCAAACCCAGGCTGACAGTGCAGAAACCAGAGACATGTTAGTGAGCCGTGGAGCTTTACGTGGCTTTTCACTTTCTAGCACAACACTGGTGGAAGAGCTACGAGCAAAAATCACATTCAATGAGAGAATAGCAATATCGGTGACTCGCCTGAGAAAGAGAATATCAAACGACACACGCAATGCTTTGTTGGTGGTGGCCATTCTTTTTGCTACAAACACTTACGAATCAGTGCGTAGCCCTCCCGGTGGAGTTTACCAAGGAGAGGGTAGTGATAAGAAAATGAGCACATCATTCGAGCACAGTGAGTATGCAGCAATGGAAGAAATTAGTGGGAAAGTGGTGATGAAAATGCATATCTTCAACTGGTTCTGGTCCTTCAATACATTCTCCTGTTATCTTTCGATTTTGATGATATGTTTTCTGATGCCACGAGGGCGAATCAGTGTTTTCGTCACCTTTCCACTTTCTATATTTTCTGGATGCTACGTCTTCTCCATGTTAGTGATATCACCCAGTTTCAGGTTAAACACTGCAACTGTGGTTCTGCCATGCGTCTTCACGCTCTTCTACGGTTGGGGAAGTTTCATATACATTAGATTAGCCAAAAAACTTAAAATGTATGCACATAAACAGAAAGACACCTTCAAGTTTGTAGGAGGAAACAGATGGTAA 1356 0.4506 MNNSLVVAAQDGDVDLLYKLIHMQPYVLEHTDFMPFVDTPLHVAAAAGHASFATEVIRLKPSFAWKLNQCGLSPMHLALQNNHHRLVCRFVEINKDLVRIKGREGLTPLHVATQTGRIDLVAKFLSACPDSIEDVTVRSETALHIAVKYNQFPALEVLVGWLQRNCQRHAQNRERRILNWQDEAGNTVLHLSVLKIFPQAVKLLLDSNIDINAKNFEDSTALDIVEINQTQADSAETRDMLVSRGALRGFSLSSTTLVEELRAKITFNERIAISVTRLRKRISNDTRNALLVVAILFATNTYESVRSPPGGVYQGEGSDKKMSTSFEHSEYAAMEEISGKVVMKMHIFNWFWSFNTFSCYLSILMICFLMPRGRISVFVTFPLSIFSGCYVFSMLVISPSFRLNTATVVLPCVFTLFYGWGSFIYIRLAKKLKMYAHKQKDTFKFVGGNRW* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1320 451 SUPERFAMILY Ankyrin repeat 5 243 IPR036770 -
Vra5g1320 451 ProSiteProfiles Ankyrin repeat profile. 184 216 IPR002110 GO:0005515
Vra5g1320 451 Pfam Domain of unknown function 284 401 IPR026961 -
Vra5g1320 451 Pfam Ankyrin repeats (many copies) 176 224 IPR002110 GO:0005515
Vra5g1320 451 Pfam Ankyrin repeats (3 copies) 84 159 IPR002110 GO:0005515
Vra5g1320 451 ProSiteProfiles Ankyrin repeat region circular profile. 184 215 - -
Vra5g1320 451 PRINTS Ankyrin repeat signature 105 120 IPR002110 GO:0005515
Vra5g1320 451 PRINTS Ankyrin repeat signature 200 214 IPR002110 GO:0005515
Vra5g1320 451 PANTHER ANKYRIN REPEAT PROTEIN 11 416 - -
Vra5g1320 451 ProSiteProfiles Ankyrin repeat profile. 104 125 IPR002110 GO:0005515
Vra5g1320 451 SMART ANK_2a 70 99 IPR002110 GO:0005515
Vra5g1320 451 SMART ANK_2a 138 170 IPR002110 GO:0005515
Vra5g1320 451 SMART ANK_2a 184 213 IPR002110 GO:0005515
Vra5g1320 451 SMART ANK_2a 104 134 IPR002110 GO:0005515
Vra5g1320 451 SMART ANK_2a 36 65 IPR002110 GO:0005515
Vra5g1320 451 Gene3D - 1 256 IPR036770 -
Vra5g1320 451 ProSiteProfiles Ankyrin repeat region circular profile. 104 125 - -
Vra5g1320 451 PANTHER HOMEOBOX PROTEIN WARIAI 11 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1320 Vra-Chr5 20093891 20095549 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1320 4 419 Miscellaneous Gene Families AT5G15500 41.608 2.86e-93 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1320 - - gmx:100790227 713.761