Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1301 ATGGTATCGAAAACCATGAGACACACTCCCAGGATTTGTGTCCACTGTGTCTTTTTGTGTTATGTATTGATTTTGTTGAACAGTGTTTGTGCATCAGCATCATCTTCTTCTCGCTGTAAAGCATGGTTAGTGCAATCCATTCCCACCAATATGCCCCACCTACACCATATTCCCGGCACCCTCTCTACTGGGGATGTGCTTCGGTGGCTGGCTGCAAACTCCACCACGAGGCTTCACATAATTGCCCAATACTGGCAGCTTCTACCTTCCCCCAACGATACTCGATCTGGGGACTATGGTTACACTCAACGTCAGATGCATGAATTTGGTGCCAGTGAAGGTATTTCTCTTTATCAAGAATTAGATGCTGCTGCTGACCGGAATGTTAGCATCAGGTTACTGTCCCACTCTGGAGTATATCCAACTTTTACCTCAGAACCATCCAAACTTGCTTTCGGAAGGCCAAATGTCGAAAATGTGACATTGCTGCTGGAGGATTGGTGGGGCTCCGGGATTGTTCATGCCAAAGTTTGGATATCTGATAGTAGGGATGTGTATATTGGATCTGCAAACAATGACTGGAAATCTCTCACACAGGTCAAGGAACTCGGAATTTACTTTACTGATTGTCCTGAAATAGCTGAAAAGGTTGAGCTGTACTTTGACAATTTGTGGACACTGGCATCTCTCAATTCTTCAGCTTACACGAAAAAAGTGTTTGATCAAGAGTGGCAAGTGGAGAGGAAGTTTCCTTGCTGGTCACATTTCATTGATCATAAAGAGAGGTGCAAGTCACCTCTTCCTCAATATCTGAAGACTCCTCATGTTGCAGGATATCCTATTCTGTCTGACCCTTACATGTTTGTGGTTTCATTTCAAACCCCTGGGACTAACTATTCAACAAAGCACCCCCAAGCCAGCTATCTATCCTTTGCACCCCCAGAGCTATTATTTGGCAAATATCAAGCTGATGAGCAGGCATGGATAGATACAATCAAGTCTGTTGGAGATAAGCAGGCAGTTAGAATCAGTACAATGGACTGGTTAGGTCAGTCACAATTTATGGACCAAACAATTTACTGGTCCTCCTTATCCTCTGCAATATCAGAGGTAGTGTTTTCGAAGAATGCAACAGTACAGCTACTGGTGGCATATTGGGCACACTCCATCAGTAACACAGATGTGTACCTCAAGTCTCTTCTCTACACCAACAACCTCTGCTCTTCCTCAAAGTACAACAAATGCTCTGGGAAAGTTGAGATAAAATATTATGTGGTTCCTGATTTCAACATGACAGGACCTGCTATTCATGGAGGAACTAAAACAGGAAACAAATACCCTGATTTTACAAGAGTGAATCATGGAAAATATGCAGTTAGTGATGTAAGGGCACACATTGGGACTAGCAACCTTGTATGGGACTACTTCTACACAACAGCAGGTGTCAGCTTTGGGACATACAACACTGCTATCATCTCTAAACTTAGTGAAATTTTCAATGCAGATTGGAACTCACCCTATGCTGTTCCATTAGAAGAGCTGGAGAAAGGTCAGAAAAGTTCAATTTAA 1569 0.4302 MVSKTMRHTPRICVHCVFLCYVLILLNSVCASASSSSRCKAWLVQSIPTNMPHLHHIPGTLSTGDVLRWLAANSTTRLHIIAQYWQLLPSPNDTRSGDYGYTQRQMHEFGASEGISLYQELDAAADRNVSIRLLSHSGVYPTFTSEPSKLAFGRPNVENVTLLLEDWWGSGIVHAKVWISDSRDVYIGSANNDWKSLTQVKELGIYFTDCPEIAEKVELYFDNLWTLASLNSSAYTKKVFDQEWQVERKFPCWSHFIDHKERCKSPLPQYLKTPHVAGYPILSDPYMFVVSFQTPGTNYSTKHPQASYLSFAPPELLFGKYQADEQAWIDTIKSVGDKQAVRISTMDWLGQSQFMDQTIYWSSLSSAISEVVFSKNATVQLLVAYWAHSISNTDVYLKSLLYTNNLCSSSKYNKCSGKVEIKYYVVPDFNMTGPAIHGGTKTGNKYPDFTRVNHGKYAVSDVRAHIGTSNLVWDYFYTTAGVSFGTYNTAIISKLSEIFNADWNSPYAVPLEELEKGQKSSI* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1301 522 PANTHER PHOSPHOLIPASE D - RELATED 14 515 - -
Vra5g1301 522 SUPERFAMILY Phospholipase D/nuclease 65 227 - -
Vra5g1301 522 SUPERFAMILY Phospholipase D/nuclease 303 515 - -
Vra5g1301 522 SMART pld_4 449 475 IPR001736 GO:0003824
Vra5g1301 522 SMART pld_4 169 196 IPR001736 GO:0003824
Vra5g1301 522 Gene3D Endonuclease Chain A 302 506 - -
Vra5g1301 522 CDD PLDc_vPLD3_4_5_like_1 43 210 - -
Vra5g1301 522 CDD PLDc_vPLD3_4_5_like_2 308 504 - -
Vra5g1301 522 Gene3D Endonuclease Chain A 62 229 - -
Vra5g1301 522 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 169 196 IPR001736 GO:0003824
Vra5g1301 522 Pfam PLD-like domain 116 225 IPR025202 -
Vra5g1301 522 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 449 475 IPR001736 GO:0003824
Vra5g1301 522 PANTHER GM01519P-RELATED 14 515 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1301 K16860 - gmx:100778897 935.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1301 5 19954271 19958310 Vra5g1301 5 19954271 19958310 ECH