Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1300 ATGGGTCATGTCGGTTCCAGCAAGGATGGCACAAAAGCAGGGATGACCACCGCGATGATGGATATGGACGGTGACAGCGGCGACGATGACCTCGGTGACCTCGACCCGACCAACGCCGAAATCCTTGAAGAATTCGGCGGAGAGGACGCATTCCGGTACCACTGCAAGAAGTTCTCGATGCTGTTTTTCGAGGAGTACGGTCTGATCAGCCACCAAATAAACTCCTACAACCACTACGTCAACGTCGGCCTCCAGAGAACTTTCGACGGCTTCGGTGACTTGGTCGTAACGCCCGGCTTCGACCCTTCCAAGAAGGGAGATAACGAGCACTACCGCTACGCCTCCATCAAGTTCGGCAAGGTCAAGCTCGACAAGCCCATGGTCTGGGGCGGTGAGTTAAACAACCAGGAGTTGAAGATGCTTCCGCGACACGCGCGGCTTCAGAGGATGACCTACGCATCCAAAATGAAGATCGTAGTTAAAGTTCAGGTGTATGTTCCGAAGAAGATTCGGAGTGATAAGTTTAAGACTGGGAAGGAAGAGTTCCTTGATAAGGAGATTTTGACGGAAGACGAGAGGGAGATCATCATTGGCAAATTGCCTGTAATGGTTAATTCAGATTTATGTTGGATGAAAGGGGAAAAGGATGATTGTGAATTTGACCATGGAGGTTATTTTCTCATCAAGGGTGCCGAGAAGACTTTTATTGCACAGGAGCAACTGTATCTAAAGAGGCTTTGGGTTATAAACAGTCCAGGTTGGATGATTGCCTACAAGTCACAGATGAAGAGAAATAGGATGGTTATTAAACTGGTTGGAAATTCTAGGAATGAAGGAGGGGAGAATGGAGACATGTTTCTTAGTGTGTATTTTCTATCTGTTGAGGTTCCTGTGTGGGTACTGTTCTTTGCACTTGGTGTCGGATCTGATAAAGATATTGTAGATCTCATTGGTTGTGACAATGATGATGTTAGAATTCAGAATATTCTCCTTGCTTCTGTTTCTGACGCTGATGAGAAATGTGGCGCATTTCGGAGGGGTAGGAATGCAGTTCAATATTTGGAGAAGTGTATAAAGGGTGTCCAATTTCCACCTCCTGAGTCTATTGAGGAGTGCCTTGAAATTTATGCCTTTCCTGGAATCAGCGGCTTAAACAGAAAAGCACGTTTCCTTGCATATATGGTGAAGGGTCTCTTGCTGGCTTATACTGGCCGCAGAAAATGCGATAACCGGGATGATTTCCGTAATAAGAGGCTTGAATTGGCCAATGAGCTTCTTGAGCGTGAGTTGAAAGTGCATATAGCACATGTTCGGAAGAGAATGTCCAAGGCACTGCAAAGGGATCTCTATGGAGATAGAGATGTACGCCCCATTGAGCATTATGTTGATGCGTCAATAATTACAAATGGTTTGCAAAGGGCATTTTCAACCGGAGCATGGTCACATCCGTACAAGAGGATGGAAAGGATCTCTGGTGTGGTTGCAACTGTTGGGCGCACTAATCCCTTACAAACCATGGCTGAGCTAAGAAGAGCAAGGCAGCAAGTTCAGTACACGGGAAAAGTTGGGGATGCTAGATATCCGCATCCTTCTCACTGGGGCAAGGTTTGTTTTCTCTCTACCCCAGATGGTGAAAATTGTGGACTAGTAAAAAATATGGCTGTCACGGGACTAGTAAGCACTGATGTATCTAATGCATCTGAATCTATACTGCCTACATTGTTGGATTGTGGGATGGAAGAACTTGTCAATGATACTAAAACTCATCTGGGAAACAAGGACAAAGTCTTCCTAAACGGTGATTGGGTTGGAGTGTGCCCTGATTCCAGTTGGTTTGTGGCTGAGCTACGAAGTAAAAGACGAAAAAATGAACTGCCCCATCAGGTGGAAATTAAGAGAGATCAATCTCAACATGAAGTGCGTATATACTCTGATGCAGGAAGGATTCTACGTCCTCTTTTAGTAGTTGGTAATCTACTAAAAATTAAAAGATTTAAATCAGAACGTTATTCTTTCCTTACTTTACTGGAAGAAGGTGTTGTTGAGCTAATTGGACCCGAAGAAGAGGAAGACTGCTGTACTGCCTGGGGCGTTCAGTATTTATTTGGAAAAGAGGGGAAAAGATCTGTCAAGTACACGCACTGTGAACTTGATATGTCATTCTTATTGGGTTTAAGTTGTTCACTTGTCCCATTTGCCAATCATGACCATGCAAGGAGGGTGCTTTACCAATCTCAGAAGCACTCCTCACAGGCTATTGGCTTTTCTACTTTAAACCCGAATATTAGAGTTGATACTTTGTCTCATCGGTTACACTATCCCCAAAGGCCCCTTTTTCAAACAATGACTTCAGATTGTCTTGGAAAACCAGCTTATCCACTGGGTCAAAGTAAAATACATCCAAAGGCGGAATTCTATAATGGGCAGAACGCAATTGTGGCTGTCAATGTACATCTAGGATACAATCAAGAAGATTCCTTGGTGATGAATCTGGCTTCATTGCAGCGTGGTATGTTCAGATCTGAGCACATAAGGAGTTACAAATCTGAAATTGATAATAAGGATTCTTCAGAGAAGAAGCGCAAACCTGAAGGCAATATAAATTTTGGAAAGCTTCAAAGTAAAATTGGTCGAGTTGATAGCCTTGATGATGATGGCTTTCCATATGTTGGGGCAAATTTGCAAAGTGGTGATATTATTATTGGGCGGTGTGCTGAGTCTGGTGCAGACCATAGTGTGAAGTTAAAGCACACTGAAAGAGGTTATGTACAAAAGGTTGTGCTGTCTTCAAATGACGAGGGAAAA 2805 0.4389 MGHVGSSKDGTKAGMTTAMMDMDGDSGDDDLGDLDPTNAEILEEFGGEDAFRYHCKKFSMLFFEEYGLISHQINSYNHYVNVGLQRTFDGFGDLVVTPGFDPSKKGDNEHYRYASIKFGKVKLDKPMVWGGELNNQELKMLPRHARLQRMTYASKMKIVVKVQVYVPKKIRSDKFKTGKEEFLDKEILTEDEREIIIGKLPVMVNSDLCWMKGEKDDCEFDHGGYFLIKGAEKTFIAQEQLYLKRLWVINSPGWMIAYKSQMKRNRMVIKLVGNSRNEGGENGDMFLSVYFLSVEVPVWVLFFALGVGSDKDIVDLIGCDNDDVRIQNILLASVSDADEKCGAFRRGRNAVQYLEKCIKGVQFPPPESIEECLEIYAFPGISGLNRKARFLAYMVKGLLLAYTGRRKCDNRDDFRNKRLELANELLERELKVHIAHVRKRMSKALQRDLYGDRDVRPIEHYVDASIITNGLQRAFSTGAWSHPYKRMERISGVVATVGRTNPLQTMAELRRARQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNMAVTGLVSTDVSNASESILPTLLDCGMEELVNDTKTHLGNKDKVFLNGDWVGVCPDSSWFVAELRSKRRKNELPHQVEIKRDQSQHEVRIYSDAGRILRPLLVVGNLLKIKRFKSERYSFLTLLEEGVVELIGPEEEEDCCTAWGVQYLFGKEGKRSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTLNPNIRVDTLSHRLHYPQRPLFQTMTSDCLGKPAYPLGQSKIHPKAEFYNGQNAIVAVNVHLGYNQEDSLVMNLASLQRGMFRSEHIRSYKSEIDNKDSSEKKRKPEGNINFGKLQSKIGRVDSLDDDGFPYVGANLQSGDIIIGRCAESGADHSVKLKHTERGYVQKVVLSSNDEGK 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1300 935 Gene3D RNA polymerase Rpb2, domain 2 252 408 IPR037034 GO:0003677|GO:0003899|GO:0006351
Vra5g1300 935 PANTHER DNA-DIRECTED RNA POLYMERASE D SUBUNIT 2B-RELATED 42 935 - -
Vra5g1300 935 Pfam RNA polymerase Rpb2, domain 5 674 718 IPR007647 GO:0006351
Vra5g1300 935 Pfam RNA polymerase beta subunit 67 468 IPR007644 GO:0003677|GO:0003899|GO:0006351
Vra5g1300 935 Pfam RNA polymerase Rpb2, domain 4 596 656 IPR007646 GO:0003677|GO:0003899|GO:0006351
Vra5g1300 935 Pfam RNA polymerase Rpb2, domain 6 727 928 IPR007120 GO:0003677|GO:0003899|GO:0006351
Vra5g1300 935 Gene3D - 409 594 - -
Vra5g1300 935 Gene3D - 61 243 - -
Vra5g1300 935 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 42 935 IPR015712 GO:0003899|GO:0006351|GO:0032549
Vra5g1300 935 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 53 934 - -
Vra5g1300 935 Coils Coil 416 436 - -
Vra5g1300 935 Pfam RNA polymerase Rpb2, domain 3 498 556 IPR007645 GO:0003677|GO:0003899|GO:0006351
Vra5g1300 935 CDD RNA_pol_B_RPB2 68 932 IPR015712 GO:0003899|GO:0006351|GO:0032549
Vra5g1300 935 Pfam RNA polymerase Rpb2, domain 2 285 420 IPR007642 GO:0003677|GO:0003899|GO:0006351
Vra5g1300 935 Gene3D - 725 864 IPR037033 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1300 Vra-Chr5 19945505 19949612 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1300 - K16252 gmx:100815934 1630.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1300 5 19945505 19949612 Vra5g1300 5 19945505 19949612 ECH