Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1292 ATGGAGGATGATAAAATAGTTGGATATGTTACCGCGTACCTGAAGAAGAAAGGTTTCACGCAAACCGAGAAGATTTTCCAGGAAGAGTTTCAGCAAAACAAAACCAACAATTCCTCCTCCAGTAATTCCCTTCTCGAACCCGACATTGCCAACCACCTCCTCGCATTCTCTCAATTGGAGAGTGGTCCGGCTAGGTTCCACGACGGCTACAGCAAACTGCGAACATGGACTTATTCTTCACTGGATTTGTACAAGCACGAGTTGCTTCGCGTGCTTTATCCCGTCTTTATCCACTGCTTTATGGACCTCGTGGCGAAAGGACATGTTCAGGAAGCTCGGAATTTCTTCAATACTTTCCGTGAAGACCACGAAATGATGCACTTGCGTGATCTTCAGAAGTTAGAAGGGGTTCTTTCTCCTACCCATCTAGAGGAAATGGAATTCGCTCACTCGCTTAGACAGAGCAAATTCAACATAAAGATATGTGAGTATTCCTATGAGCTTCTCTTGCAACATCTACACAGTACTCAATCCACCACTATACTCGGTATTATAAATGAGCATATTAACTTTCAAGTTTCCCCTGGACAACCTAGCTTAATTTCTGATGATCCGGAAGCTGTTACCCTTACTGGAAGCAGCCAGGAAGCAGCAAACCGGATAAATCAAAAAGAAATTCATTGGGGGTTACTTGAAGATTCTCTTGAAGAACGGCTAGAGAAGGCAGGGACCTTGCTTTCAGACTCGGAAAAGGGTGAAGGGGAAACAAAAGAGGGGGAGAATGACGAGACTAAGAAAAGATCCATTGAAGGAGGAAAGCAAGGCGGTTCAGTAAAAAAAGTAAAAAAGGACAAGGGTGGTAGTACAACTGGAAAGAGTGCAAAACCTGAAGCTAGTACTGTACCTGCAGCTCCTCGAGTTAAGCCTGAACTCCCCTTACCCTTAATCCCAACTGAGGTGGAACAGTCCATCCTTGAAGATTTAAGGAACCGTGTACAGCTCAGCAGTGTTGCATTGCCGTCAGTTAGCTTTTACACATTTATAAATACACATAACAGTTTAAGCTGTTCATCGATATCCCATGACGGATCATTAATTGCTGGAGGATTTTCTGACTCATCACTCAAGGTTTGGGATATGGCAAAGCTTGGACAACCGACTGCCAGTTCTCTTTTGCAGGGTGAGAATGACACATCACCAAATGATCAAATATTTGGGCAAGGGGTTGGGAAAAGACAGTATACACTATTTCAAGGTCATTCAGGACCTGTTTATGCAGCCTCTTTTAGTCCCGTGGGTGATTTTATCCTTTCATCCTCAGCAGACTCAACAATTCGGTTATGGAGCACCAAACTTAATGCCAATCTTGTTTGTTATAAGGGTCACAATTACCCTGTCTGGGATGTTCAGTTTAGTCCTGTAGGGCATTATTTTGCCAGCTCTTCACACGACAGAACTGCTAGGATTTGGTCAATGGACAGGATACAGCCCTTAAGAATAATGGCAGGGCACTTATCTGATGTTGATTGTGTACAATGGCATGCCAACTGCAACTACATTGCAACTGGTTCCAGTGACAAAACAGTTCGACTATGGGATGTGCAGAGCGGTGAGTGTGTCCGGGTTTTTGTTGGTCACAGGGGTATGATTTTGTCTTTGGCAATGTCTCCTGATGGTCGCTATATGGCATCTGGGGATGAAGATGGCACGATCATGATGTGGGACCTCTCTAGTGGCCGCTGTCTCACCCCTTTGATTGGGCACACGTCTTGTGTCTGGTCCCTTGCGTTCAGTTCTGAAGTTTCAATTCTAGCATCTGGATCTGCTGATTGCACTGTAAAATTGTGGGATGTAAATACGAGCACCAAGGTTTCAAGGGCTGAAGAAAAAAGTGGGAATGCTAACAGACTTAGATCGCTGAAAACTCTGGCAACCAAATCAACCCCAGTTTACTCATTGCGGTTTTCTCGAAGGAATCTTCTCTTTGCGGCTGGGGCTCTAGCAAAAAGTGGGTAA 2016 0.4454 MEDDKIVGYVTAYLKKKGFTQTEKIFQEEFQQNKTNNSSSSNSLLEPDIANHLLAFSQLESGPARFHDGYSKLRTWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHVQEARNFFNTFREDHEMMHLRDLQKLEGVLSPTHLEEMEFAHSLRQSKFNIKICEYSYELLLQHLHSTQSTTILGIINEHINFQVSPGQPSLISDDPEAVTLTGSSQEAANRINQKEIHWGLLEDSLEERLEKAGTLLSDSEKGEGETKEGENDETKKRSIEGGKQGGSVKKVKKDKGGSTTGKSAKPEASTVPAAPRVKPELPLPLIPTEVEQSILEDLRNRVQLSSVALPSVSFYTFINTHNSLSCSSISHDGSLIAGGFSDSSLKVWDMAKLGQPTASSLLQGENDTSPNDQIFGQGVGKRQYTLFQGHSGPVYAASFSPVGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRVFVGHRGMILSLAMSPDGRYMASGDEDGTIMMWDLSSGRCLTPLIGHTSCVWSLAFSSEVSILASGSADCTVKLWDVNTSTKVSRAEEKSGNANRLRSLKTLATKSTPVYSLRFSRRNLLFAAGALAKSG* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1292 671 MobiDBLite consensus disorder prediction 243 290 - -
Vra5g1292 671 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 543 580 - -
Vra5g1292 671 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 417 449 - -
Vra5g1292 671 Pfam WD domain, G-beta repeat 579 617 IPR001680 GO:0005515
Vra5g1292 671 Pfam WD domain, G-beta repeat 496 533 IPR001680 GO:0005515
Vra5g1292 671 Pfam WD domain, G-beta repeat 414 449 IPR001680 GO:0005515
Vra5g1292 671 Pfam WD domain, G-beta repeat 349 379 IPR001680 GO:0005515
Vra5g1292 671 Pfam WD domain, G-beta repeat 456 491 IPR001680 GO:0005515
Vra5g1292 671 Pfam WD domain, G-beta repeat 537 575 IPR001680 GO:0005515
Vra5g1292 671 ProSitePatterns Trp-Asp (WD) repeats signature. 604 618 IPR019775 -
Vra5g1292 671 ProSiteProfiles LIS1 homology (LisH) motif profile. 2 34 IPR006594 GO:0005515
Vra5g1292 671 ProSiteProfiles Trp-Asp (WD) repeats profile. 501 542 IPR001680 GO:0005515
Vra5g1292 671 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 3 670 IPR037783 -
Vra5g1292 671 ProSitePatterns Trp-Asp (WD) repeats signature. 366 380 IPR019775 -
Vra5g1292 671 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 585 620 - -
Vra5g1292 671 Gene3D - 325 496 IPR015943 GO:0005515
Vra5g1292 671 ProSiteProfiles Trp-Asp (WD) repeats profile. 585 626 IPR001680 GO:0005515
Vra5g1292 671 Gene3D - 497 577 IPR015943 GO:0005515
Vra5g1292 671 PRINTS G protein beta WD-40 repeat signature 436 450 IPR020472 -
Vra5g1292 671 PRINTS G protein beta WD-40 repeat signature 520 534 IPR020472 -
Vra5g1292 671 PRINTS G protein beta WD-40 repeat signature 604 618 IPR020472 -
Vra5g1292 671 ProSitePatterns Trp-Asp (WD) repeats signature. 520 534 IPR019775 -
Vra5g1292 671 PANTHER CANNONBALL-RELATED 3 670 - -
Vra5g1292 671 ProSiteProfiles Trp-Asp (WD) repeats profile. 417 449 IPR001680 GO:0005515
Vra5g1292 671 ProSitePatterns Trp-Asp (WD) repeats signature. 562 576 IPR019775 -
Vra5g1292 671 SUPERFAMILY WD40 repeat-like 341 666 IPR036322 GO:0005515
Vra5g1292 671 ProSiteProfiles Trp-Asp (WD) repeats profile. 459 500 IPR001680 GO:0005515
Vra5g1292 671 CDD WD40 417 666 - -
Vra5g1292 671 ProSiteProfiles Trp-Asp (WD) repeats profile. 543 584 IPR001680 GO:0005515
Vra5g1292 671 SUPERFAMILY Taf5 N-terminal domain-like 51 194 IPR037264 -
Vra5g1292 671 Pfam WD40 associated region in TFIID subunit, NTD2 domain 61 189 IPR007582 -
Vra5g1292 671 MobiDBLite consensus disorder prediction 243 308 - -
Vra5g1292 671 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 501 538 - -
Vra5g1292 671 SMART WD40_4 494 533 IPR001680 GO:0005515
Vra5g1292 671 SMART WD40_4 452 491 IPR001680 GO:0005515
Vra5g1292 671 SMART WD40_4 536 575 IPR001680 GO:0005515
Vra5g1292 671 SMART WD40_4 410 449 IPR001680 GO:0005515
Vra5g1292 671 SMART WD40_4 578 617 IPR001680 GO:0005515
Vra5g1292 671 SMART WD40_4 340 379 IPR001680 GO:0005515
Vra5g1292 671 Gene3D TFIID subunit TAF5, NTD2 domain 45 194 IPR037264 -
Vra5g1292 671 ProSiteProfiles Trp-Asp (WD) repeats profile. 347 380 IPR001680 GO:0005515
Vra5g1292 671 CDD TAF5_NTD2 63 195 IPR007582 -
Vra5g1292 671 Gene3D - 578 670 IPR015943 GO:0005515
Vra5g1292 671 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 459 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1292 Vra-Chr5 19815499 19824598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1292 411 620 Miscellaneous Gene Families AT5G08390 32.243 8.90e-29 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1292 K03130 - gmx:100805953 1212.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1667 6 32613390 32624024 Vra5g1292 5 19815499 19824598 PCT