Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1290 ATGGCGTCTGCAGATAAACGTTTGGAAGAACAACTTCTCGAAGCCGGTAACAAGCTTGCAAACCCTCCGTCTTCTGCAGAGGAGCTTCTCTCACTCTTAGAGCAAGTAGAAAGTTGCCTTTCAAGGGTTGAACAGTCACCAACAGTTTCTATGCAAAATGCACTCTCTCCATCATTGAAAGCAATGGTTGGTGACCAACTTTTAAGGCACTCAGATAATGATGTCAAGGTTGCAGTTGCCTCTTGCATCAGTGAAATAACAAGAATCAGTGCACCTGATGCTCCTTATGACGATGATCAAATGAAGGAGGTCTTTCACCTGATAGTATCTTCATTTGAAAATTTGCATGACAAGTTAAGTCGATCATATGCCAAGAGAATCTCAATTCTGGAAACTGTTGCAAAAGTCCGATCCTGTGTGGTAATGCTGGACCTTGAGTGTGATGCCCTGATTTCGGATATGTTTCAACATTTCTTGAAAGGTGTAAGGGAACATCATCCAGAAAATGTTGTTTTGTCCATGGAAACAATTATGACTGTTGTTGTCGAGGAAAGTGAAGATATATCCTTAGCCCTGCTGTCCCCACTACTGGACAGCATTAAGAAAGACAACGAGGAAGTTTTTCCAATTGCCCAAAAATTGGGGGAGAGGGTTCTTGAAAATTGTGCAACCAAGCTTAAACCCTACTTGGTTCAAACAGTGAGATCCTTGGGTGTATCTGTTGATGATTATAGTGCTGTACTTGCTTTAATATGCCAAGATACATCTGATGATTTGGAAAAGAATGATACATGTGTGACTAGTGAGCATGCGGAAGATAAGAGCGATTCAGAAAAACAATCACTGGAGAAGTCAACACATGTATCTCCTTTAATGCTCCTTTTTTTTCTGTGCTGTTTTAGACTTTTATTATGGTTATTGTTGTTTGAGCAGGTGGTTAAAAAGGATTCAAGGGAAGTTACATCCTCTCAACGAGGAAATCCTGATGCGAATAAATCTCCTAACTCAGGCATGAGCTATGGTATTGCATGTGTTGGAGAAGATACTGCTTTAGCTTATTCCAGTCCCATTAAAAAGAAAGAGGATACTGATTGTTCCAACCACTCTGAAGGTTTGAATATATCTGGTCATGAGGTGGGTAGAGATTTGGACACCAAAAAAGTTGACAATAGTAAACAAAAGGCAGGAAAAGCTACCAAGAGACCACGAAAGAAATCAAGCTCTTCTACTAAATTGGCAAAACCTTCCAAGGATCAAGTTGCTGCTAATGAGAAGGAAACTGTGAAAATGCTTGACTGTGAAAGCAACAGTAAGATAGTTCCCAGTTCCCCTCACAAGGAACGTTTTGTTGAAGCAGCAGGATCTCCAGAGAGTAATAAAGAAATTGATGCTAAGATTTCATCACCAGTGGCAGTAAATGATGAATCTGAAGTGGTTGCTTCTGCTCCAAGTGAGAGCCTCAATGAAAATCACTCCAAGAAACTTGGACGATCGACAAAGGAAGATGACTCTGTAAAAGAAGGTGCTGCATATGATGTTTCTAAGGTGTCTGGAGGAGCTAGTGATTCAGAAGCCAAACCTGTGACGCGGTCAGTGAAAAAGGCACTAGGTCAAAAGTCTTTGAAAAAAACTAGTGCGGTAGATTCTGTAAAAAAAGAAAGTGGGGCAACAAACAATGCAGATGCTAAGAAATACTCAGCAAAAAAATTAGAAGAAAACAAAAAGGGTAGTGGTGGATCCTCCTCAAGGCAGGTGGAAGACAGGAAAAAAGGAGGGCGAGGAAAAGCAAAGACTGAGACAGATGTAGCAAAGTCATCTGCTATGAATGTGGACAAAGAAATAGTTTCTACTCCGAGGTCTTGTACAAAATCTGCCAAAGATGCAAGTTCAGAGGAGAAAAGGAAACTTACTTCAGGAAAAGAAAATGAGTATGATACAAAGGAATATGGTGAAAACCTTGTCGGTTTACGGGTCAAAGTTTGGTGGCCTAAGGATCGTGAGTTTTACAAGGGTATTATTGATTCTTTTGATTCTGCAAAAAAGAAGCACAAGGTATCGTATGATGATGGTGATGAAGAAATATTAAATCTAGGGAAGGAGAAATGGAAGGTCATTGAAAAGGACTCAGATGCAGATGAGGAAGATCGGAGTGATCGTGCAAGTCTTGATGCTTCCATTGATATGCAACCAAAGAAGAAAGGGAAAACAAGTGATGGTGAAACCACCAAGCAGGGAAAGATGGATGTTTCTGCCAGAAGTGGTGGAATAAAGACGAATAGTAGATCAAAAAGTGTATCCCTGAAGTCTAGTCAAAGGTCCAAAGATGGCAACAAATTGAAAGATTCCAAGACAAATAGCAAATCTGAGGATGGAGTTAATAAAAAATCTAAGGAAGACACTCCTAAAAGTCCTAGCAGTAAATCCATTGTTGCTACTAAAATACTGAGTAAGAAATCGAAAAATACTGATACTTCCAGGACTGGGGAATTAAATGATGACTACAGTAGTGCGGCAAAGCCGTCTTCCAAGTCTAAGCTAGAAATTCTAAAAAGTGGAAAATCCAAAAAAACAACCCCAAAGACTGCCGTTTCCAAAGAAAAACCTCTCAAAAGTGGTGGAAAGGCTGATGTTAATGGTACCGGCAAGGTGAAATCTGATTCATTGAAGAGAAAATATTTTGAGAATGATAATTCAGATGTTTCAGAAGGAAAGCTAAAAGATGCCAAGGTCAAGACTTCAATTTCGTCTAAGGCACAAGGAAGTGAGGTCAAGAGTGGAAAGAAGCGTAGGAGAAGCTAG 2799 0.4001 MASADKRLEEQLLEAGNKLANPPSSAEELLSLLEQVESCLSRVEQSPTVSMQNALSPSLKAMVGDQLLRHSDNDVKVAVASCISEITRISAPDAPYDDDQMKEVFHLIVSSFENLHDKLSRSYAKRISILETVAKVRSCVVMLDLECDALISDMFQHFLKGVREHHPENVVLSMETIMTVVVEESEDISLALLSPLLDSIKKDNEEVFPIAQKLGERVLENCATKLKPYLVQTVRSLGVSVDDYSAVLALICQDTSDDLEKNDTCVTSEHAEDKSDSEKQSLEKSTHVSPLMLLFFLCCFRLLLWLLLFEQVVKKDSREVTSSQRGNPDANKSPNSGMSYGIACVGEDTALAYSSPIKKKEDTDCSNHSEGLNISGHEVGRDLDTKKVDNSKQKAGKATKRPRKKSSSSTKLAKPSKDQVAANEKETVKMLDCESNSKIVPSSPHKERFVEAAGSPESNKEIDAKISSPVAVNDESEVVASAPSESLNENHSKKLGRSTKEDDSVKEGAAYDVSKVSGGASDSEAKPVTRSVKKALGQKSLKKTSAVDSVKKESGATNNADAKKYSAKKLEENKKGSGGSSSRQVEDRKKGGRGKAKTETDVAKSSAMNVDKEIVSTPRSCTKSAKDASSEEKRKLTSGKENEYDTKEYGENLVGLRVKVWWPKDREFYKGIIDSFDSAKKKHKVSYDDGDEEILNLGKEKWKVIEKDSDADEEDRSDRASLDASIDMQPKKKGKTSDGETTKQGKMDVSARSGGIKTNSRSKSVSLKSSQRSKDGNKLKDSKTNSKSEDGVNKKSKEDTPKSPSSKSIVATKILSKKSKNTDTSRTGELNDDYSSAAKPSSKSKLEILKSGKSKKTTPKTAVSKEKPLKSGGKADVNGTGKVKSDSLKRKYFENDNSDVSEGKLKDAKVKTSISSKAQGSEVKSGKKRRRS* 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1290 932 MobiDBLite consensus disorder prediction 699 742 - -
Vra5g1290 932 SUPERFAMILY Tudor/PWWP/MBT 652 693 - -
Vra5g1290 932 MobiDBLite consensus disorder prediction 773 802 - -
Vra5g1290 932 MobiDBLite consensus disorder prediction 323 338 - -
Vra5g1290 932 MobiDBLite consensus disorder prediction 564 600 - -
Vra5g1290 932 PANTHER ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED 2 899 IPR039776 GO:0007064
Vra5g1290 932 MobiDBLite consensus disorder prediction 828 842 - -
Vra5g1290 932 MobiDBLite consensus disorder prediction 883 911 - -
Vra5g1290 932 MobiDBLite consensus disorder prediction 490 509 - -
Vra5g1290 932 Pfam Sister chromatid cohesion protein PDS5 protein 27 237 - -
Vra5g1290 932 PANTHER TRANSCRIPTIONAL REGULATOR 2 899 - -
Vra5g1290 932 SUPERFAMILY ARM repeat 51 246 IPR016024 -
Vra5g1290 932 MobiDBLite consensus disorder prediction 602 624 - -
Vra5g1290 932 MobiDBLite consensus disorder prediction 418 432 - -
Vra5g1290 932 MobiDBLite consensus disorder prediction 359 648 - -
Vra5g1290 932 MobiDBLite consensus disorder prediction 743 772 - -
Vra5g1290 932 MobiDBLite consensus disorder prediction 318 338 - -
Vra5g1290 932 MobiDBLite consensus disorder prediction 846 872 - -
Vra5g1290 932 MobiDBLite consensus disorder prediction 699 932 - -
Vra5g1290 932 Gene3D - 645 697 - -
Vra5g1290 932 MobiDBLite consensus disorder prediction 375 396 - -
Vra5g1290 932 MobiDBLite consensus disorder prediction 803 818 - -
Vra5g1290 932 MobiDBLite consensus disorder prediction 625 648 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1290 Vra-Chr5 19776181 19784647 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1290 - - vra:106762282 1685.23