Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1287 ATGTTGATACCCAGATTGAACGTGTATGATGCAGGGGAACTCATCTTGCTCGCCAAGCTCGTCAAAACCGTAGAATCCCTCCGCCGCTTCCACGCGCTCACGGTGACGTGCGGCCACTCAACCAACCTTTTCATTGCTGCAAAGCTCATCTCTCTCTACGATTCTCTCCAAAATGACCACGTTTCATGTTCCACTCTCTTCTACTCTCTTCCCTCCAAAGACACCTTCGTCTACAACTCCTTCCTCAAATCCCTCTTCTCCCGCTCCCTCTTCCCCCACGCTCTCACCCTCTTCTCACACATGACACGCGCTTCCAACCTCTCTCCCAACCACTTCACTCTCCCCATCGTTGTCTCCGCCTCTGCGCACCTCTCGCTCCTCCCCCACGGTGCCTCGCTCCATGCCCTCGCCTTCAAAACCGGCCTCTTTCATTCTTCCTCCGCCTCCTTCGTGTCGTTTTACTCGCGCTGTGGTGAGATGGACCTTGCATGCAAGGTGTTTGATGAAATTCCTGTTCAGGACGTAGCTGTTTGGACTGCACTTATCATCGGCCACGTCCAGAATGGGGAGCCGGAGAAGGGTTTGAAGTGTCTACGTGACATGCATGAGGTTGGTGAGGATTCTCAAAAGCCCAACGTTAGAACGTGGGAGGGTGGGTTTTTGGCGTGTGGAAATCTGGGGGCTGCGAGAGAAGGCGCTTGCTTGCATGGGGTGGTTATCAAACACGGGGTTGCTTCTTTTGTACAATCTTCCGTTTTGGCTATGTATTCCAAATGTGGGGTCCTTCGAGAAGCGTATCGAGCATTTTTTGAGGCGACTCACAGAGATCTTTTGTCTTGGACGTCCATCATCGGGGTTTGTGCGAGGTTTGGGATGATGGGGGAGTGTGTGAAGTTGTATAGAGAAATGCAGGAAAACGAAATACGTCCAGATGGGATTGTTATTGGTTGCATGCTTTCGGGATTCGGTAATTCCATGGACGTGACTCAAGGGAAAGCGTTTCATGGAATGATTATTAGGAGACAGTACGTTGATGCTGAGGAAGTTAATGATTTGCTGTTGTTTATGTACAGCAAGTTTGGAATGTTGAGTTTGGCAGAGAGGATTTTCCCAATGTGTCGCAGGAGCGCAGAGGGCTGGAACTTTATGGTTTTTGGGTATGATAGAATGGGGGAGAGCGTGAAGTGTGTTGAGCTCTTCAGGGAGATGCAATGTATAGGTATTCGTTCTGATTCAATTGGGATAGTTTCAGCTATTAGCTCGTGTGCTCAGTTGGGAGCAGTTAATTTGGGAAGGTCGATTCATTGCAACGTGATAAAGGGTTTTCTGGATAATGACATCACGGTCACCAACTCGCTCATAGAGATGTATGGAAAATGTAGTAGGATGACCTATGCATCGAGAATATTTAACCGGTCTCAGAGAGATGTTGTGTCGTGGAACACTTTGATTTCGTCTCATGTTCATATCAAGCAGCATGAAGAGGCTGTAGATTTATTTGATAAAATGGTTAGAGAAGGACAGCAGCCCAATACTGCCACACTTACGGTAGTACTTTCAGCATGTTCTCACCTAGCAGCTCTAGAGAAAGGAGAAAGAGTTCACCGCTACATACAAGAAAGTAGTTTTAGAGTCAATTTACCTCTTGGCACAGCGCTGGTTGATATGTATGCTAAATGTGGTCAGCTGCAAAAGTCAAGAATGGTATTTGACTCTATGATGGAGAAGGATGAAATTTGCTGGAATGCAATGATTTCAGGTTATGGAATGAATGGATATGCAGAATCTGCTTTGGAGATATTCCGACGTATGGAGGAATCAAACGTTATGCCCAACGAAATTACCTTCCTCTGTCTTCTCTCAGCATGTGCCCATGCAGGACTTGCTGAAGAAGGGAAGTACGTGTTCGCGAGAATGCAGAGTTATTCTTTGAGTCCCAATTTAAAGCACTACACCTGTATGGTGGATCTTTTGGGAAGGTCAGGTAATCTGCAGGAAGCAAAAGCTATGGTCCTATCTATGCCTATGTCTCCAGACAGCGGTGTCTGGGGAGCTTTGTTAGGTCATTGTAAAACTTACAATCAAGTAGAGATGGGAATAAGTATTGCAACTTATGCTATTAACTCTGAACCAGAAAATGACGGCTACTATATATTGTTGGCCAATTTGTATAGCTCCATTGGGAGGTGGGAAGAAGCAGAAAATGTGAGAAGGGCAATGAAAGAGAGGTGTTCAACGCCAAAGAAAGCTGGTTGGAGTCTGCTCTGA 2268 0.466 MLIPRLNVYDAGELILLAKLVKTVESLRRFHALTVTCGHSTNLFIAAKLISLYDSLQNDHVSCSTLFYSLPSKDTFVYNSFLKSLFSRSLFPHALTLFSHMTRASNLSPNHFTLPIVVSASAHLSLLPHGASLHALAFKTGLFHSSSASFVSFYSRCGEMDLACKVFDEIPVQDVAVWTALIIGHVQNGEPEKGLKCLRDMHEVGEDSQKPNVRTWEGGFLACGNLGAAREGACLHGVVIKHGVASFVQSSVLAMYSKCGVLREAYRAFFEATHRDLLSWTSIIGVCARFGMMGECVKLYREMQENEIRPDGIVIGCMLSGFGNSMDVTQGKAFHGMIIRRQYVDAEEVNDLLLFMYSKFGMLSLAERIFPMCRRSAEGWNFMVFGYDRMGESVKCVELFREMQCIGIRSDSIGIVSAISSCAQLGAVNLGRSIHCNVIKGFLDNDITVTNSLIEMYGKCSRMTYASRIFNRSQRDVVSWNTLISSHVHIKQHEEAVDLFDKMVREGQQPNTATLTVVLSACSHLAALEKGERVHRYIQESSFRVNLPLGTALVDMYAKCGQLQKSRMVFDSMMEKDEICWNAMISGYGMNGYAESALEIFRRMEESNVMPNEITFLCLLSACAHAGLAEEGKYVFARMQSYSLSPNLKHYTCMVDLLGRSGNLQEAKAMVLSMPMSPDSGVWGALLGHCKTYNQVEMGISIATYAINSEPENDGYYILLANLYSSIGRWEEAENVRRAMKERCSTPKKAGWSLL* 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1287 755 Pfam PPR repeat 279 307 IPR002885 -
Vra5g1287 755 Pfam PPR repeat 380 408 IPR002885 -
Vra5g1287 755 Pfam PPR repeat 650 674 IPR002885 -
Vra5g1287 755 Pfam PPR repeat 177 205 IPR002885 -
Vra5g1287 755 Pfam PPR repeat family 576 624 IPR002885 -
Vra5g1287 755 Pfam PPR repeat family 475 523 IPR002885 -
Vra5g1287 755 Gene3D Tetratricopeptide repeat domain 551 755 IPR011990 GO:0005515
Vra5g1287 755 Gene3D Tetratricopeptide repeat domain 243 379 IPR011990 GO:0005515
Vra5g1287 755 Gene3D Tetratricopeptide repeat domain 380 550 IPR011990 GO:0005515
Vra5g1287 755 PANTHER - 22 232 - -
Vra5g1287 755 PANTHER - 147 333 - -
Vra5g1287 755 PANTHER - 316 524 - -
Vra5g1287 755 PANTHER - 430 754 - -
Vra5g1287 755 TIGRFAM PPR: pentatricopeptide repeat domain 279 311 IPR002885 -
Vra5g1287 755 TIGRFAM PPR: pentatricopeptide repeat domain 478 512 IPR002885 -
Vra5g1287 755 TIGRFAM PPR: pentatricopeptide repeat domain 579 613 IPR002885 -
Vra5g1287 755 TIGRFAM PPR: pentatricopeptide repeat domain 177 205 IPR002885 -
Vra5g1287 755 TIGRFAM PPR: pentatricopeptide repeat domain 614 647 IPR002885 -
Vra5g1287 755 Pfam E motif 693 743 IPR046848 -
Vra5g1287 755 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 577 611 IPR002885 -
Vra5g1287 755 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 208 IPR002885 -
Vra5g1287 755 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 612 646 IPR002885 -
Vra5g1287 755 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 476 510 IPR002885 -
Vra5g1287 755 SUPERFAMILY TPR-like 474 735 IPR011990 GO:0005515
Vra5g1287 755 Gene3D Tetratricopeptide repeat domain 137 242 IPR011990 GO:0005515
Vra5g1287 755 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 276 310 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1287 Vra-Chr5 19747133 19751536 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1287 149 743 Glycoside Hydrolase AT3G49170 29.344 3.89e-83 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1287 - - gmx:100780090 1235.71