Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1251 ATGTCGATTATACCGAAAGGCGATTCGGTTCAAATCAGGGAGGTTTGGAACGATAACCTCGAAGAGGAGTTCGCGTTGATCCGCGAAATCGTGGACGAGTATAACTACGTGGCGATGGATACCGAGTTCCCCGGCGTGGTACTCCGTCCGGTGGGGAATTTCAAGAACATCAACGACTACAACTACCAAACGTTGAAGGATAACGTTGACATGTTGAAGCTGATCCAATTAGGTCTCACCTTCTCCGATGAGAACGGGAACCTCCCTACCTGCGGCACCGAGAGTCCCTGCATCTGGCAATTCAACTTTCGCGAGTTCAACATCAGCGAAGACATCTTCGCTAGCGATTCGATCGAGTTGTTGCGCCAGTGCGGGATCGATTTCAAAAAGAACAGCGAGAAGGGAATCGACGTGAACCGGTTTGGGGAGCTTCTCATGTCCTCTGGAATTGTGCTGAACGACGCCGTTCATTGGGTTACCTTTCACAGCGGCTACGATTTTGGCTACCTTCTTAAGCTGTTGACATGCCGAAGCTTGCCGGATACGCAGGCTGGGTTCTTCGATTTGATCAAGATGTATTTCCCGATGGTGTATGATATCAAGCATCTGATGAAGTTCTGCAACAGCCTCCATGGTGGGTTGAACAAGCTTGCGGAGTTGTTGGAGGTGGAAAGGGTTGGTGTGTGCCATCAGGCTGGGTCTGATAGTTTACTCACTTCTTGTACATTTAGAAAGTTGAGGGATACATTCTTCAGTGGCTCAACGGAGAAATATGCTGGTGTCTTGTATGGTTTAGGTGTTGAAAGTGGACAGACTAATTGA 822 0.4866 MSIIPKGDSVQIREVWNDNLEEEFALIREIVDEYNYVAMDTEFPGVVLRPVGNFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTESPCIWQFNFREFNISEDIFASDSIELLRQCGIDFKKNSEKGIDVNRFGELLMSSGIVLNDAVHWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFDLIKMYFPMVYDIKHLMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLTSCTFRKLRDTFFSGSTEKYAGVLYGLGVESGQTN* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1251 273 Gene3D - 2 268 IPR036397 GO:0003676
Vra5g1251 273 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 1 272 IPR039637 GO:0004535|GO:0030014
Vra5g1251 273 PANTHER CCR4-ASSOCIATED FACTOR 1 HOMOLOG 10-RELATED 1 272 - -
Vra5g1251 273 SUPERFAMILY Ribonuclease H-like 12 265 IPR012337 -
Vra5g1251 273 Pfam CAF1 family ribonuclease 15 136 IPR006941 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1251 Vra-Chr5 18934704 18936353 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1251 K12581 - gmx:100785970 554.288