Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1237 ATGATGGAATCCGGTGCTCACTTCTGCAACTCTTGTGGTGAACAAGTTGGACATGATGCTAATGGGGAGCTGTTTGTGGCTTGTCATGAATGCTATTTCCCAATTTGCAAGGCTTGTTTTGAATATGAAGTCAATGAGGGACGTAAGGTCTGCTTGAGATGTGCCACTCCCTATGCTCATAGAGCAAAAGATAATGATGACACCAAGGCTTATGGAAATCAATCCACTATGGCTGCCCAGATCGATGTTTCTCAGGATGTTGGGCTCCATGCTAGGCATGTCAGTACTGTGTCCACAGTGGATAGTGAACTTAACGATGAATCTGGGAATCCAATCTGGAAAAATAGAGTGGAAAGCTGGAAGGAAAAGGATAAAAAGAACAAGAAGAAAAAGTCTGCACCTAAGGCTGAAAATGAGGCACCAATTCCACAAGAACAGCAGATGGAAGAAATACAGTCCTCAGAGGCTGCAGCTGCTGAGCCACTTTCAGCGATTATTCCAATCCCAAAAACGAGAATAACACCATACCGAATTGTGATAGTCGTGCGACTTATAATCTTGGGTCTTTTCTTCCATTATCGAGTTACAAATCCTGTTGACAGTGCTTTTGGTCTGTGGTTGACATCCATCATCTGTGAGATCTGGTTTGCATTTTCCTGGGTATTAGATCAGTTCCCTAAATGGTGTCCCGTCAACAGGGACACTTTTATTGACAGGCTTTCTGCAAGATATGAAAGGCCTGGTGAACCCTCTCAGCTTGCTGCTGTGGATTTCTTTGTCAGTACAGTCGATCCTCTAAAAGAACCTCCATTGATCACTGCTAACACAGTGCTTTCAATTCTTGCTGTGGACTACCCTGTGGATAAAGTATCCTGTTATGTGTCTGATGATGGTGCTGCAATGCTGACATTTGAGTCCCTTGTGGAAACAGCTGACTTTGCAAGAAAATGGATTCCATTTTGCAAAAAGTTTTCAATTGAACCACGTGCACCTGAGTTCTACTTCTCTCAGAAGATTGACTACCTTAAGGACAAAGTACAACCTTCTTTTGTAAAGGAACGTAGAGCAATGAAGAGAGACTATGAAGAGTTTAAAGTGAGAATTAATGCTTTGGTAGCAAAGGCTCAGAAAACACCAGATGAAGGATGGACTATGCAAGATGGAACCTCATGGCCAGGAAATAATTCACGCGATCACCCTGGCATGATTCAGGTTTTCCTTGGACACAGTGGTGCCCATGACATAGAAGGAAATGAACTTCCCAGATTGGTGTATGTTTCCAGAGAGAAAAGGCCAGGTTACCAACACCACAAAAAGGCTGGTGCTGAAAATGCACTGGTGAGGGTGTCTGCAGTTCTCACAAATGCTCCCTTTATTCTCAATCTTGATTGTGATCATTATGTGAACAATAGCCAGGCTGTTCGGGAAGCAATGTGTTTTCTGATGGATCCAGTAGTTGGTAGAGATTTGTGCTATGTGCAGTTTCCCCAGAGATTTGATGGTATTGATCGTAGTGATCGATATGCCAATCGCAACACAGTTTTCTTTGATGTTAACATGAAAGGTCTTGATGGCATTCAAGGACCTATGTATGTGGGAACTGGATGTGTTTTCAATAGACAAGCACTTTATGGTTACAGCCCACCTTCCATGCCCAAATTATCAAAATCATCATCCTGTTGTTGCTGCCCCTCAAAGAAGCAAACCAAAGATGTCTCGGAGCTTTATAGAGATGCAAAGAGGGAAGAACTCGATGCGGCCATTTTTAATCTTAGGGAGATTGACAATTATGATGAATACGAGAGGTCAATGCTGATTTCACAAATGAGCTTTGAGAAAACATTTGGTTTGTCCACTGTTTTCATTGAATCTACACTAATGGAGAGTGGAGGCCTGCCAGAATCTGCTGATCCATCAATGCTGATCAAAGAGGCCATTCATGTTATTAGCTGTGGATATGAAGAGAAGACTGCATGGGGAAAAGAGATTGGATGGATCTATGGTTCAGTGACTGAGGATATCTTAACGGGTTTCAAGATGCAATGCCGTGGATGGAGATCAGTTTACTGCATGCCCTTAAGGCCTGCATTCAAAGGATCAGCACCAATCAATCTTTCTGATCGGTTGCACCAAGTTCTTCGATGGGCCCTTGGATCAGTTGAAATCTTCTTCAGTAGACATTGTCCCCTCTGGTATGGTTTTGCAGGAGGTCGCCTCAAATGGCTGCAGAGACTTGCTTACATAAACACCATTGTATACCCATTCACATCCCTTCCTCTCGTTGCTTATTGCACTTTGCCTGCAATTTGCCTTCTCACAGGAAAATTCATCATACCAACGCTTTCGAACCTTGCAAGTGCCCTCTTTCTTGGACTTTTCCTGTCCATTATAATCACTAGTGTGCTTGAGCTGCGGTGGAGTGGCGTGACGATTGAAGCTTTGTGGCGTAATGAGCAGTTCTGGGTGATTGGAGGAGTTTCAGCCCATCTGTTTGCTGTGTTCCAAGGATTCCTGAAGATGTTGGCTGGTGTTGACACTAACTTCACTGTCACCGCCAAAGCTGCTGAAGACACTGAGTTTGGTGAACTATATATCATCAAGTGGACCACACTCTTAATTCCTCCAACCACCCTTATCGTTATTAACATAGTTGGTGTTGTGGCTGGCTTTTCTGATGCACTTAATGGAGGATATGAGTCTTGGGGACCACTTTTTGGAAAAGTTTTCTTTGCCTTTTGGGTTATTTTCCATCTCTATCCATTCCTCAAGGGTCTCATGGGTCGCCAAAATCGTACTCCAACCGTTGTTATTCTGTGGTCAGTGTTGTTGGCGTCTGTCTTCTCTCTGGTGTGGGTGAAGATTAACCCTTTTATCAGCAGAGCTGACAGTTCAAGCATCTCCCAGACCTGTATTTCAATAGATTGTTAA 2928 0.4344 MMESGAHFCNSCGEQVGHDANGELFVACHECYFPICKACFEYEVNEGRKVCLRCATPYAHRAKDNDDTKAYGNQSTMAAQIDVSQDVGLHARHVSTVSTVDSELNDESGNPIWKNRVESWKEKDKKNKKKKSAPKAENEAPIPQEQQMEEIQSSEAAAAEPLSAIIPIPKTRITPYRIVIVVRLIILGLFFHYRVTNPVDSAFGLWLTSIICEIWFAFSWVLDQFPKWCPVNRDTFIDRLSARYERPGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFESLVETADFARKWIPFCKKFSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRDYEEFKVRINALVAKAQKTPDEGWTMQDGTSWPGNNSRDHPGMIQVFLGHSGAHDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPFILNLDCDHYVNNSQAVREAMCFLMDPVVGRDLCYVQFPQRFDGIDRSDRYANRNTVFFDVNMKGLDGIQGPMYVGTGCVFNRQALYGYSPPSMPKLSKSSSCCCCPSKKQTKDVSELYRDAKREELDAAIFNLREIDNYDEYERSMLISQMSFEKTFGLSTVFIESTLMESGGLPESADPSMLIKEAIHVISCGYEEKTAWGKEIGWIYGSVTEDILTGFKMQCRGWRSVYCMPLRPAFKGSAPINLSDRLHQVLRWALGSVEIFFSRHCPLWYGFAGGRLKWLQRLAYINTIVYPFTSLPLVAYCTLPAICLLTGKFIIPTLSNLASALFLGLFLSIIITSVLELRWSGVTIEALWRNEQFWVIGGVSAHLFAVFQGFLKMLAGVDTNFTVTAKAAEDTEFGELYIIKWTTLLIPPTTLIVINIVGVVAGFSDALNGGYESWGPLFGKVFFAFWVIFHLYPFLKGLMGRQNRTPTVVILWSVLLASVFSLVWVKINPFISRADSSSISQTCISIDC* 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1237 975 SUPERFAMILY Nucleotide-diphospho-sugar transferases 270 768 IPR029044 -
Vra5g1237 975 SUPERFAMILY RING/U-box 2 63 - -
Vra5g1237 975 MobiDBLite consensus disorder prediction 115 154 - -
Vra5g1237 975 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 79 IPR013083 -
Vra5g1237 975 Pfam Cellulose synthase 256 966 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vra5g1237 975 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 403 547 IPR029044 -
Vra5g1237 975 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 8 [UDP-FORMING] 2 975 - -
Vra5g1237 975 MobiDBLite consensus disorder prediction 116 136 - -
Vra5g1237 975 Pfam Zinc-binding RING-finger 5 60 IPR027934 -
Vra5g1237 975 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 2 975 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1237 Vra-Chr5 18765535 18770948 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1237 1 975 Glycosyltransferase AT4G18780 81.726 0.0 1672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1237 K10999 - gmx:100806522 1847.4