LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra5g1230	ATGCCTTCCTTTTCCACTCTCCGGAGATGCTCTCCGTTCACCCAACGCTTCCGTACACTGAGTTCTTCTACTTCCCAGTCTTCATCTTCTCCCAGTCCTCGTCGCAATCCCAGTTGGGCTTCGGGTTTAGCCATTGTTGCCGGCGTAGCCTCTGCTCTTGCTCTTTTCTATTGCTACAACTCACCCACTTCACCCTTCCATTCTGTTTTCTTCAACAATATCCCTCGCAGTTCTTCATTGCCATTAACCCTTCCTGAAACTGCTCATGGTTTGCTTGTTCGAGATGCGTACAGAGCCAAGGTTTTCTTCTACTATGAGAAGCGCCTCCGGTTGCATAGTTCACCCTTAAAGGTTTTTGAATACTTTGCATCTTGTCGTACCCCAGAAGGAGAGATACTGATGAAGCCTTCGGACCTAATGCGAGCAGTTGTTCCAGTTTTTCCTCCATCAGAATCCAACCTAGTAAGAGAGGGATACTTGAAAGGTGAAAGAGATCCTGGCCATTTGTGGTGTCCCCCTTCGGATTTTTTTATGCTTTTTGATGTAGACAACGATGGACTTATATCCTTCAAAGAGTATATATTTTTCGTAACTCTGCTTAGCATCCCAGAATCAAGCTTTTCCGCAGCATTTAAAATGTTTGACAAGGATAATGACGGAGAGATAGACAAGGAAGAATTCATGAAAGTCATGCAATCAATGCGATCGCATACCAGACTGGGTGTTCACCATGGGGATGGAAGACGAACTGGCCGAAAGATCAATGCTTCTGTAGAGAATGGAGGGCTGTTGGAATACTTATTTGGTAAAGATGGAAGGGGACGCCTAAAACATGATAAATTCGTTCAGTTTATAAGAGACTTGCATGATGAAATTGTGAGGTTGGAGTTTGCTCATTATAATTATAAATCTCGAAAAACTATATCGGCCAAGGACTTTGCACGCTCCATTGTTTCTTCTGCTGACTTGAGTCATCTAGGCAGGTTGCTTGAACTGGTTGATGACTTGAGCAATGATACACGGCTTAAGGATGTACGCATAACATTTGAGGACTTCAAAACCTTTTCCGAGCTGCGGAAAAAGTTATTACCATTTTCGTTGGCCATTTTCAGTTTTGCAGACGTACAAGGCCTGATAACAAGAGATGATTTTCAGCGAGCTGCATCACATGTTTGCGGTTTGTCTCTCTCGGACAATGTGGTTGAGATTGTTTTCCATTTGTTTGACGCAAATAGGGATGGAAGTTTAAGTACAGAGGAGTTTGTTAGAGTGCTACAACATCGAGAAAGAGACATGGCTCAAACCATGGAGACAGGAATCATGGGATTTTTGTCATGCTGCTGGAAATGTACGGACACCTCTCCATCTTCACGGTTGTTTTCCTGGTTTTGA	1392	0.4353	MPSFSTLRRCSPFTQRFRTLSSSTSQSSSSPSPRRNPSWASGLAIVAGVASALALFYCYNSPTSPFHSVFFNNIPRSSSLPLTLPETAHGLLVRDAYRAKVFFYYEKRLRLHSSPLKVFEYFASCRTPEGEILMKPSDLMRAVVPVFPPSESNLVREGYLKGERDPGHLWCPPSDFFMLFDVDNDGLISFKEYIFFVTLLSIPESSFSAAFKMFDKDNDGEIDKEEFMKVMQSMRSHTRLGVHHGDGRRTGRKINASVENGGLLEYLFGKDGRGRLKHDKFVQFIRDLHDEIVRLEFAHYNYKSRKTISAKDFARSIVSSADLSHLGRLLELVDDLSNDTRLKDVRITFEDFKTFSELRKKLLPFSLAIFSFADVQGLITRDDFQRAASHVCGLSLSDNVVEIVFHLFDANRDGSLSTEEFVRVLQHRERDMAQTMETGIMGFLSCCWKCTDTSPSSRLFSWF*	464

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra5g1230	463	CDD	EFh_MICU	207	428	-	-
	Vra5g1230	463	MobiDBLite	consensus disorder prediction	16	37	-	-
	Vra5g1230	463	ProSitePatterns	EF-hand calcium-binding domain.	215	227	IPR018247	-
	Vra5g1230	463	Pfam	EF hand	208	234	IPR002048	GO:0005509
	Vra5g1230	463	Gene3D	-	267	438	-	-
	Vra5g1230	463	SUPERFAMILY	EF-hand	176	427	IPR011992	-
	Vra5g1230	463	ProSiteProfiles	EF-hand calcium-binding domain profile.	396	431	IPR002048	GO:0005509
	Vra5g1230	463	ProSitePatterns	EF-hand calcium-binding domain.	409	421	IPR018247	-
	Vra5g1230	463	ProSiteProfiles	EF-hand calcium-binding domain profile.	202	237	IPR002048	GO:0005509
	Vra5g1230	463	Gene3D	-	156	239	-	-
	Vra5g1230	463	Pfam	EF-hand domain pair	377	428	IPR002048	GO:0005509
	Vra5g1230	463	Pfam	EF-hand domain pair	177	198	IPR002048	GO:0005509
	Vra5g1230	463	PANTHER	EF HAND DOMAIN FAMILY A1,A2-RELATED	1	461	IPR039800	GO:0005509\|GO:0006851
	Vra5g1230	463	SMART	efh_1	206	234	IPR002048	GO:0005509
	Vra5g1230	463	SMART	efh_1	172	200	IPR002048	GO:0005509
	Vra5g1230	463	SMART	efh_1	400	428	IPR002048	GO:0005509
	Vra5g1230	463	CDD	EFh	177	232	IPR002048	GO:0005509
	Vra5g1230	463	PANTHER	CALCIUM-BINDING EF HAND PROTEIN	1	461	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra5g1230	Vra-Chr5	18674107	18682931	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra5g1230	75	393	EF-hand Containing Proteins	AT4G32060	66.458	2.57e-148	429

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra5g1230	K22827		-	gmx:100786375	732.25