Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1227 ATGGGCACTGTCTCTCTTCTTAAGTGCTACAGACCCTTATTCTCCACGCTTTTTCCTCGCTCCCCTCCATCAACACCCCACGCCGCCATCTTCAGGAGGAAGAACCCGCGGTCCTTCTGCGCCTGCTCGTCTCCGCCGTTGACGGCTGAGAAGGATTGCGGCGAATCCAACGCCGAGGGTTTCACCCTGAAGAAATCCGCGCCGGAGGTATGGCTGCACAACACCATGAGTAAAACAAAACAACTCTTCAAACCCAAAGTGGAATCCAAAGTGGGAATGTACGTGTGTGGCGTCACCGCCTACGATCTCAGCCATATTGGACATGCACGCGTGTATATCAATTTCGACCTTCTTTACAGATACTTTAAGCATCTGGGATTTGAAGTCTGTTATGTTCGCAATTTTACTGACGTTGATGACAAGATAATTGCTAGAGCGAAAGATTTAGGAGAAGATCCAATCAGTTTGAGCCGGCACTATTGTGAAGAATTCTGTCGAGACATGATAACTCTTAATTGTCTGCCTCCCACTGTGGAACCAAAGGTCTCGGAGCACATGCCCCAAATCATTGATATGATTGAGAAGATTCTTAATAATGGGTATGCCTACATTGTTGATGGGGATGTATACTTTAATGTAGAAAAATTTCCAGAATATGGAAAATTATCCAGTCGAGATCTAGAAGATAACCGAGCTGGTGAGAGGGTTGCAGTTGACTTAAGAAAGAAAAATCCTGCTGATTTTGCTCTGTGGAAGTCTTCAAAGCCTGGGGAGCCATTTTGGGAAAGTCCCTGGGGTCCTGGAAGACCTGGGTGGCATATTGAATGCAGTGCCATGAGTGCAGCTTATCTTGGTTACTCTTTTGACATCCACGGTGGAGGAATTGATCTTGTGTTTCCTCACCATGAGAATGAAATTGCTCAGAGTTGTGCTGCTTGCAAGAAAAGTGATATAAGCGTATGGATGCACAATGGTTTTGTTACAATTGATTCTGTGAAGATGTCAAAATCTTTGGGAAATTTTTTCACGATACGTCAGGTTATAGACATTTACCATCCACTGGCTTTGAGATATTTTTTGATGAGTGCTCATTATCGATCTCCTGTTAACTACTCAAATGTACAACTTGAAAGTGCTTCAGACCGTATCTTTTATATATATGAGACATTACACGAATGCAAAAGCTTCTTGAATCAGCATGATCAGACAAGTAGAAAAGATTCCATCCCACCAGATACATTGAATATTATTGATAAGTTCCATGATGTTTTTCTGACCTCAATGTCAGATGATCTTCATACGCCAGTTGTATTGGCTGGAATGTCTGATCCCTTAAAATCAATAAATGATTTGCTGCATACCCGTAAGGGGAGAAAACAACAATTTCGAATAGAGTCACTTACAGTTTTAGAGAAGAGCATCGGGGATGTCCTTACTGTTTTAGGACTAATGCCTGCAAGTTACTATGAGGTTTTGCAGCAGCTAAAGGAAAAAGCTTTAAAGCGTGCAAACTTGACAGAAGAGAAAGTGTTGGAAAAAATAGAAGAACGGGCTGCTGCTAGAATAGAAAAGGACTATGCTAAATCAGATGCAATTAGGAAGGATTTGGCTATTCTTGGTATTACTCTTATGGACAGTCCAGATGGCACAACTTGGAGGCCTACCATTCCTCTTCCACTTCAAGAGCTTCTCTAG 1695 0.4248 MGTVSLLKCYRPLFSTLFPRSPPSTPHAAIFRRKNPRSFCACSSPPLTAEKDCGESNAEGFTLKKSAPEVWLHNTMSKTKQLFKPKVESKVGMYVCGVTAYDLSHIGHARVYINFDLLYRYFKHLGFEVCYVRNFTDVDDKIIARAKDLGEDPISLSRHYCEEFCRDMITLNCLPPTVEPKVSEHMPQIIDMIEKILNNGYAYIVDGDVYFNVEKFPEYGKLSSRDLEDNRAGERVAVDLRKKNPADFALWKSSKPGEPFWESPWGPGRPGWHIECSAMSAAYLGYSFDIHGGGIDLVFPHHENEIAQSCAACKKSDISVWMHNGFVTIDSVKMSKSLGNFFTIRQVIDIYHPLALRYFLMSAHYRSPVNYSNVQLESASDRIFYIYETLHECKSFLNQHDQTSRKDSIPPDTLNIIDKFHDVFLTSMSDDLHTPVVLAGMSDPLKSINDLLHTRKGRKQQFRIESLTVLEKSIGDVLTVLGLMPASYYEVLQQLKEKALKRANLTEEKVLEKIEERAAARIEKDYAKSDAIRKDLAILGITLMDSPDGTTWRPTIPLPLQELL* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1227 564 PANTHER CYSTEINE--TRNA LIGASE, CHLOROPLASTIC/MITOCHONDRIAL 69 558 - -
Vra5g1227 564 SUPERFAMILY Nucleotidylyl transferase 70 379 - -
Vra5g1227 564 Gene3D HUPs 55 372 IPR014729 -
Vra5g1227 564 PANTHER CYSTEINYL-TRNA SYNTHETASE 69 558 IPR024909 -
Vra5g1227 564 CDD CysRS_core 71 372 IPR032678 -
Vra5g1227 564 PRINTS Cysteinyl-tRNA synthetase signature 93 104 IPR024909 -
Vra5g1227 564 PRINTS Cysteinyl-tRNA synthetase signature 129 138 IPR024909 -
Vra5g1227 564 PRINTS Cysteinyl-tRNA synthetase signature 258 276 IPR024909 -
Vra5g1227 564 PRINTS Cysteinyl-tRNA synthetase signature 289 310 IPR024909 -
Vra5g1227 564 Hamap Cysteine--tRNA ligase [cysS]. 70 555 IPR015803 GO:0004817|GO:0005524|GO:0006423
Vra5g1227 564 Pfam tRNA synthetases class I (C) catalytic domain 83 379 IPR032678 -
Vra5g1227 564 Gene3D - 373 554 - -
Vra5g1227 564 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 410 554 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vra5g1227 564 Coils Coil 489 509 - -
Vra5g1227 564 TIGRFAM cysS: cysteine--tRNA ligase 72 553 IPR015803 GO:0004817|GO:0005524|GO:0006423
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1227 Vra-Chr5 18652362 18656819 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1227 K01883 - gmx:100786700 1041.57