Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1219 ATGCAGAGACGAAGTCCTCCCAAGCACAGACACGATGGAACTTCGCCGCTGCCTCTCGGCATGGATTGGAGTCCTGCGCCTCGAAAATGGAATGGGCAAGATACAGTATGGCCACACAATCATCGTACTGGATGGAGTTATTGTGTCACAATACCTTCTTGGTCCTTTGTTCCAAAATCAAGGAATTCAGATCCTGTAGTGTTCTACAGGGTTCAAGTTGGTGTACAGTCACCGGAAGGGATTACAAGGCTCCATGGAGTATTAAGAAGGTTCAATGATTTTTTAAAGTTGTTTGCTGATCTTAAAAAGGAGTTTCCCAGGAAAAATATCCCTCCAGCTCCGCCCAAGGGACTCTTGCGTTTGAAAAGCCGAGCTTTGTTAGAAGAGAGAAGGTGCTCTTTGGAAGAGTGGATCACGAAACTATTGTCTGACATTGATGTATCAAGATGCGCTGCAGTGGCATCATTTCTCGAACTAGAAGCAGCTGCTAGATTTTCATTCCAAGATGCAAGCCAGCAAAATTCTGAAGCAGATCCTGATTCCAATAACACAGTTTATTCTGTGCAATCACCTCTCCAGTCAAGCTTATCGTTACTTGCTGGCAGTTCATCAGTTGCCTCTGATTATGGTAGTGATACCGCATATGAGCCATCTGACCTAGGAACACCAAGAGTTGGACGGGATGATAATTCTGATGTTGGTAATAATACCATGGAGCTTTTCTCTGAGCCTGGGCATGCCAAGGTTGTTGGTCATGTGCGTAAGCTTTCAAATGAGAGTTTTGGAAGTGAAGGAAGCTCATTGCGTGGTAGTGACATCTCTAATTTTGGGATTCCAAATTCCTCTGGTGAGGGCTCTCATGACCTTCCTGGATCAGCTTCGGTTTCAAGAGACACGGATATTATGGGCCACACAAAGTTGAAATCTACTGGTGATACTCAATTAGTTTTTCCACTAGATCAACGCAATAAATTGAACAGGATTCTTTCAACCATGCAACGAAGGCTAGGCACGGCAAAAACTGATATGGAGGACCTTATAGTTAGATTAAATCAAGAAATAACTGCAAAGGATTTTCTTGCAACTAAGGTCAAGGATTTGGAAGTAGAACTTGAAACTACCAAACAGAAAAACAAGGAGAACTTACAACAGGCTATTCTAATTGAGAGAGAAAGGTTTACCCAAATGCAGTGGGATATGGAGGAACTTAGACGAAAATCAATGGAAATGGAGATGAATCTAAAGTCAGAATCGGGGGGGAATCCTTACCAGAATTCGACAAAGGAATCAATTGTTCTGCAGAATGATGTACTGTTACAGAATTTAGAAACTACTAAAGAGCATCTAGAAGTTTTGTCAAAACAGTATGGAGAGCTAGAAGCAAAATCCAAGGCAGATCTTAAAGTTCTGGTTAAAGAGGTCAAATCTCTTCGTAATTCCCAAACAAAGTTAAAGAAAGAGCTTAGTGAGTCGATAAAAGAAAACAGTGAAACTGAGAAACTACTACTTCACGAAAGAGAGAGGAGGGAACGGGCAGAAGCTGCGCGGAGAAAACTGCTGGAGAAATGCAGGTTTCTTTTCAACCAGCTTCAGGAGTGCAATGTCAGTCTTCCTTATGAATGTGAAGATAGAACAGTCATGAATTCATCATCATTGAGTGATGCTTTTAATCAATTAACGACATCCGATGACCAAATGGACATCCTATTATCAGAGGTAGAAAACTTAGATAAGGAATATGGAAGTGCGGTTTCCAGTGTAGATAAAGCCAATGGCACCAAAGATGGTGTAATCTGTGATGATGAAGTGGGTAAGATCATAACAGACTTGTTCATGGATAATGTTAGACTGAGAAAACAGACAAACCGTGTCGCAAGGCATGCTCTGAAATTGGACATGACAGGAACAGATGATACCCCTTCAATGGAAACTATAGAAAGTATTTAA 1947 0.415 MQRRSPPKHRHDGTSPLPLGMDWSPAPRKWNGQDTVWPHNHRTGWSYCVTIPSWSFVPKSRNSDPVVFYRVQVGVQSPEGITRLHGVLRRFNDFLKLFADLKKEFPRKNIPPAPPKGLLRLKSRALLEERRCSLEEWITKLLSDIDVSRCAAVASFLELEAAARFSFQDASQQNSEADPDSNNTVYSVQSPLQSSLSLLAGSSSVASDYGSDTAYEPSDLGTPRVGRDDNSDVGNNTMELFSEPGHAKVVGHVRKLSNESFGSEGSSLRGSDISNFGIPNSSGEGSHDLPGSASVSRDTDIMGHTKLKSTGDTQLVFPLDQRNKLNRILSTMQRRLGTAKTDMEDLIVRLNQEITAKDFLATKVKDLEVELETTKQKNKENLQQAILIERERFTQMQWDMEELRRKSMEMEMNLKSESGGNPYQNSTKESIVLQNDVLLQNLETTKEHLEVLSKQYGELEAKSKADLKVLVKEVKSLRNSQTKLKKELSESIKENSETEKLLLHERERRERAEAARRKLLEKCRFLFNQLQECNVSLPYECEDRTVMNSSSLSDAFNQLTTSDDQMDILLSEVENLDKEYGSAVSSVDKANGTKDGVICDDEVGKIITDLFMDNVRLRKQTNRVARHALKLDMTGTDDTPSMETIESI* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1219 648 MobiDBLite consensus disorder prediction 210 234 - -
Vra5g1219 648 Coils Coil 467 494 - -
Vra5g1219 648 Coils Coil 357 384 - -
Vra5g1219 648 PANTHER PX DOMAIN-CONTAINING PROTEIN EREL1-RELATED 238 640 IPR044588 GO:0015031
Vra5g1219 648 PANTHER PX DOMAIN-CONTAINING PROTEIN EREL1-RELATED 1 238 IPR044588 GO:0015031
Vra5g1219 648 MobiDBLite consensus disorder prediction 259 293 - -
Vra5g1219 648 Gene3D - 46 185 IPR036871 GO:0035091
Vra5g1219 648 SUPERFAMILY PX domain 40 160 IPR036871 GO:0035091
Vra5g1219 648 PANTHER PX DOMAIN-CONTAINING PROTEIN EREL1-RELATED 1 238 - -
Vra5g1219 648 PANTHER PX DOMAIN-CONTAINING PROTEIN EREL1-RELATED 238 640 - -
Vra5g1219 648 MobiDBLite consensus disorder prediction 1 24 - -
Vra5g1219 648 Pfam PX domain 87 158 IPR001683 GO:0035091
Vra5g1219 648 SMART PX_2 43 160 IPR001683 GO:0035091
Vra5g1219 648 Coils Coil 502 529 - -
Vra5g1219 648 Coils Coil 435 462 - -
Vra5g1219 648 ProSiteProfiles PX domain profile. 47 164 IPR001683 GO:0035091
Vra5g1219 648 MobiDBLite consensus disorder prediction 259 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1219 Vra-Chr5 18567434 18577786 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1219 - - vvi:100267879 704.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1219 5 18567434 18577786 Vra5g1219 5 18567434 18577786 ECH