Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1212 ATGGCTCCCACGACGATCCGGAAGGCGATTGGGGTGGTGAAGGACCAGACCAGCATAGGGATTGCGAAGGTCGCCAGCAACATGGCGCCGGAGATGGAAGTCGCGGTTGTCAAGGCAACCAGCCACGACGACGACCCCGCCAGCGAGAAGTACGTCAGGGAGATCTTGAACCTCATGTCGCACTCGCGGGGCTACGTCCACGCATGCGTCTCCGCGGTGTCCAAGCGTTTGGGGAAGACGCGCGACTGGATTGTGGCGCTCAAGGCGCTCATGCTCGTACACCGGCTCATGAACGAGGGTCCCCCTCTGTTCCAGGAGGAGATCCTTTACGCCACCCGCAGAGGAACACGGCTCCTCAATATGGCTGATTTTAGAGACGAGGCTCACTCCAGCTCCTGGGATCACTCGGCTTTTGTGAGGACCTATGCCATGTATCTCGATCAGAGGCTTGAGTTGATGCTGTTTGATAGAAAGAGCACCGCCGCCGGTGCCGGTGGTGGTAGTGTTGGCGGCGGCGGCGGTGCTGATGATAGGTTTGGCGGAAGGGAAAATTTCCGGTCGCCGCCGTATGAGTACGGTGGTGGGGAGTACAGAGGGGAAGGTGGTTATGGGTATGATAATGGGATGAGGAGGACGAGGTCTTTTGGGGACATGAGTGAATCGGTGGGCAGGGGAGATGAGAGAAGTGTTGTGAGTGTGACTCCTTTGAGGGATATGACTCCGGAGAGGGTTTTCGGTAAGATGGGCCATTTGCAGAGGTTGTTGGATCGGTTTCTGGCTTGTAGACCTACTGGGTTGGCGAAGAATAGTAGGATGGTCTTGATTGCTTTGTATCCGGTGGTTAAGGAGAGTTTTCAGTTGTATGCTGATATATGTGAGGTTTTGGCTGTGTTGCTTGACAAGTTCTTTGATATGGAGTATGCCGATTGCGTGAAGGCTTTTGATGCTTATGCCAGTGCGGCTAAGCAGATTGATGAGCTTGTTGCTTTTTATAATTGGTGTAAGAATACTGGTGTGGCTAGGTCCTCGGAGTACCCTGAGGTTCAGAGGATTACCAGCAAGTTGCTTGAGACGTTGGAGGAGTTTGTGAGGGATAGGGCTAAGAGGCCGAAGAGTCCCGAGAGGAAAGAGGAGGCTCCACCTGTAGAGAAGGTAGAGGAGGAGCCGGCACCAGATATGAACGAAATCAAAGCATTGCCTCCTCCGGAGAATTATACCCCTCCTCCTCCACCCGAGCCGGAGCCTAAGCCCCAGCCGCAGGTTACAGAGGATTTGGTGAATCTGAGAGATGATACAGTCACTGCAGATGACCAGGGGAATAAGTTTGCTTTGGCTCTGTTTGCTGGTGCGCCTGCCAATAATGCAAATGGATCATGGGAAGCATTCCCTTCAAATGGACAACCAGAAGTGACTTCAGCCTGGCAAACCCCAGCTGCAGAGCCAGGGAAAGCTGATTGGGAATTGGCATTGGTAGAGACCGCAAGCAATTTGTCGAAGCAGAAGGCAGCTTTAGGTGGTGGTTTAGATCCTCTATTATTGACTGGCATGTATGATCAAGGAATGGTCAGGCAGCATGCTAGCACTACCCAATTGAGTGGGGGGAGTGCAAGCAGTGTGGCATTGCCAGGACCGGGAAAGACTACAACCCCTGTTTTGGCTCTCCCTGCTCCGGATGGATCTGTGCAGCCAGTTAATCAGGATCCATTTGCTGCATCCTTGAGCATTCCACCCCCGTCCTATGTCCAAATGGCTGATATGGAGAAGAAGCAGCATTTGCTTGTGCAGGAGCAGCAGGTGTGGCATCAGTATGCAAGGGATGGGATGCAAGGCCAGTCTAGTTTGGCCAAACTGAGTGGCCCTGGATACTATGCCGGAGGCCCCATGCCCATGATGCCTTATGGAATGCCCCCAGTCAATGGAATGGGACCTCCAGCCGGGTATTATCAAACTCCTTACTGA 1959 0.5334 MAPTTIRKAIGVVKDQTSIGIAKVASNMAPEMEVAVVKATSHDDDPASEKYVREILNLMSHSRGYVHACVSAVSKRLGKTRDWIVALKALMLVHRLMNEGPPLFQEEILYATRRGTRLLNMADFRDEAHSSSWDHSAFVRTYAMYLDQRLELMLFDRKSTAAGAGGGSVGGGGGADDRFGGRENFRSPPYEYGGGEYRGEGGYGYDNGMRRTRSFGDMSESVGRGDERSVVSVTPLRDMTPERVFGKMGHLQRLLDRFLACRPTGLAKNSRMVLIALYPVVKESFQLYADICEVLAVLLDKFFDMEYADCVKAFDAYASAAKQIDELVAFYNWCKNTGVARSSEYPEVQRITSKLLETLEEFVRDRAKRPKSPERKEEAPPVEKVEEEPAPDMNEIKALPPPENYTPPPPPEPEPKPQPQVTEDLVNLRDDTVTADDQGNKFALALFAGAPANNANGSWEAFPSNGQPEVTSAWQTPAAEPGKADWELALVETASNLSKQKAALGGGLDPLLLTGMYDQGMVRQHASTTQLSGGSASSVALPGPGKTTTPVLALPAPDGSVQPVNQDPFAASLSIPPPSYVQMADMEKKQHLLVQEQQVWHQYARDGMQGQSSLAKLSGPGYYAGGPMPMMPYGMPPVNGMGPPAGYYQTPY* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1212 652 SMART enth_2 30 160 IPR013809 -
Vra5g1212 652 CDD ANTH_N_AP180_plant 33 152 - -
Vra5g1212 652 SUPERFAMILY ENTH/VHS domain 30 151 IPR008942 -
Vra5g1212 652 ProSiteProfiles ENTH domain profile. 24 160 IPR013809 -
Vra5g1212 652 PANTHER - 5 628 - -
Vra5g1212 652 SUPERFAMILY GAT-like domain 235 365 - -
Vra5g1212 652 MobiDBLite consensus disorder prediction 364 421 - -
Vra5g1212 652 PANTHER CLATHRIN ASSEMBLY PROTEIN 5 628 IPR045192 GO:0048268|GO:0072583
Vra5g1212 652 Gene3D - 2 156 IPR008942 -
Vra5g1212 652 MobiDBLite consensus disorder prediction 364 393 - -
Vra5g1212 652 Pfam ANTH domain 32 152 IPR011417 GO:0005543
Vra5g1212 652 Pfam ANTH domain 215 365 IPR011417 GO:0005543
Vra5g1212 652 Gene3D ANTH domain 230 376 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Vra5g1212 652 MobiDBLite consensus disorder prediction 401 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1212 Vra-Chr5 18519884 18522595 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1212 - - gmx:100787076 1096.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1212 5 18519884 18522595 Vra5g1212 5 18519884 18522595 ECH