Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1201 ATGAACTTAGAAGCAAGTGAAAACGATTCAGTGGTGACTCAGATCAGCATTGGTGGATTTGACAGTGAGGTAAAAGCAAGTGATCTGGTGAATTATTTGGAGAATAAAATTGGACTTGTCTACAGGTGTAGGTTAAAGACTTCTTGGACCCCTCCAGAGTCATATCCGGAATTTAATATCACTGATACTGCAAAGATTACGAGAACAGATGACTATATGAAAGTCAAGCCTCATGCCTTCGTGCATTTTGCATCTTCAGAGTCAGTGACTGCTGCCCTCAATGCTTCAGGTCGTTGTGATATGTTTTTAAAGAATGAACCCTTAAAGGTCAGCTGTGGACCTGAAAATCCATACTTCCTGAACCAAAGGAGGAGAACTACAACTCCTTTTAAGATGTCTGATGTAATTGTTGAAATTGGGACATTGGTTAGCCCAGGGGAGTTTTCTGTTGCTTGGAAAGGGCCTGATAAAGGAGTAAAATTTCTAGTGGATCCTTTTGATGGCATGTGCAGGTTTTGTTTCACTAGAGATACTGCATTCTCATTCAAGGGTATAGACAAAAAGGCAGTTATAAAGTGTGATTTTCAGGTGGGATTCCTGGTTAGAGACATTAATGAGATGAGGAGATATAATGATACATCGTATCTCGTTGTATTATTACACCTAGCTTCTTCACCTTGGGTTTGGTACAGAACTGCCGAGGATGACATTGAAGATTTAGTACCATTTGATTTACTGGATGATGATGATCCTTGGATTAGAACCACTGATTTTACTCCTAGTGGGGCAATTGGTCGATGCAATTTTTATAAAATTTCAATCCCTCCTCGGCATGGTGCAAAATTGATGAAGGCCATGCTTTATCTGAAAGGTCAGAGAGTGCAAATACATGAGCTTCCAGTTAAACAGACCCTAAGGGCACTGAATGAACCTGATTTTGGCAGGCCCATGTTAGATGCTTTCTTTTATATAGATTATCAGAAGGGCATTGCTTTTGACATAATGTTTTTGGTCAATGCTGTTGTACATAAAGGCATATTCAATCAGCACAGGTTGTCTGATAGGTTTTTTGAATTGCTAAGAAATCAATCTGAGGAACTCAATGTGGCTGCCCTGAAGCATTTATGTTCTTACAAGCGCCCGGTATTTGATGCAACTAAGAGGCTAAAAGTAGTTCAAGAATGGTTGCTTAGAAACCCAAAACTCTATCAGATCTCTAAACAGTTGGATGATATTGTTGAGGTTAGGAGATTGGTTATTACTCCATCAAAAGCGTATTGTATACCACCTGAAGTTGAACTTTCCAACAGGGTTCTCAGAAAATTCAGAGAAGTTTCAGATTGTTTCTTGAGAGTGACCTTTATGGATGAAGGCATGCAGACAATTAATGTGAATGCCCTTAACTATTATGTTGCTCCTATTGTGAAGGAAATCACATCAAACTCGTTCCCTCAAAAGACAAAAATATATAATAGGGTGAAGACCATCTTGGAAACGGGATTTTCCTTTTGTGGCCGAAAATATTCATTTTTAGCCTTTTCATCCAATCAACTTAGAGATCGTTCTGCTTGGTTTTTTGCTGAAGGAAAGATAAGATGTGATGAAATACGGAGTTGGATGGGCAGGTTTAATCAGAAGAATGTTGCAAAGTGTGCTGCTAGGATGGGACAATGCTTCTCATCTACCTATGCAACAGTTGAAGTTGTTGCAAATGAGGTGAACTTCGCGCTACCTGATGTTGAGCGGAATAACTACGTTTTCTCTGATGGAATTGGTATGCTCTCTCCTGATCTTGCAAGGGAAGTAGCAGAAAAATTGAAATTGGACAATATACCCTCTGCTTACCAGATCAGATACGCTGGTTTTAAAGGGGTTGTGGCTTCTTGGCCATCTAAAGGGGATGGGATCAGACTTTCTTTGAGGCCTAGTATGAACAAGTTTCAGTCTTCTCATACTATCTTGGAGATCTGTGCTTGGACTAGGTTTCAGCCTGGTTTTCTTAACAGGCAGATTATAACACTGCTTTCAGCACTGGGTGTGCCTGATGACATATTTTGGCAAATGCAGGAGGCAATGCTTTTGAAGTTAAACCAAATGCTTGTGGATGCAGATATCGCTTTTGACGTTCTTACCAAATCATGTGCTGAGCATGGGAATGCTGCAGCAATAATGTTAAGTTGCGGCTTCAGTCCCCAAACGGAACCTCATCTTAGAGGTATGTTAACTTCTACACGTGCTGCACAGCTTTGGGGACTCAGAGAAAAGTCCAGGATTTTTGTATCATCTGGGCGATGGTTGATGGGAGTCTTAGATGAGTCGGGTGTTCTTGAACAGGGGCAGTGCTTTGTTCAAGTGTCTACTCCATCTCTTGAGAATTGTTTCTCAAAGCATGGGTCAAGGTTTTCAGAGACAAAGAACCTGCAAGTAGTTAAAGGTTTTGTGATTATAGCCAAAAATCCTTGTCTTCATCCAGGTGATGTACGAGTTTTGGAGGCAGTTGATGCCCCCGATTTACATCACTTATGCGATTGTCTTGTTTTCCCTCAGAAGGGTGACAGGCCACATACAAATGAAGCTTCTGGAAGTGACCTTGACGGGGATCTATATTTTGTCACATGGGATGAAAATCTCATTCCACCAAGTAAGAGGAGCTGGGTACCTATGGAGTATGCCGCTGCAGAAAGCAAACTTCTGACACGTCAAGTCATGACTCGAGACATCATAGAATTTTTTGTCAGAAACATGGTAAATGAAAATTTGGGTGCTATCTGCAACGCACATGTGGTGCATGCTGATTCCAGTGACTATGGTGCCTTGGATGAGAAATGCATACACTTAGCGGAACTAGCTGCTACTGCTGTTGATTTTCCAAAGACCGGGAAGCTTGTCACTATGCCTTATCATCTGAAACCAAAACTGTACCCTGATTTTATGGGGAAAGAGAATCACCAGTCGTACAGGTCGAAGAAAATTCTGGGTAGACTTTACAGGCGTATCAAAGATGCTTATGATGAAGATATTGATGCACCCTATTTGAACTTTGTGTCTGGCGATATACCATATGATAAAGATCTTGAGGTTCCAGGATCTGCTGATTTTATTGCTGATTCGTGGGAGCAAAAATGTGCATATGACGGCCAGTTGAGTGGGTTACTTGGTCAATACAAAGTTAAAAGAGAAGAGGAAGTTGTTACTGGACAGATATGGTCCATGCCAAAATACAACAGCAGGAAGCAAGGGGAGCTTAAGGAGAGGCTGAAGCACTCATACAGTGCCCTAAAAAAGGAATTTAGGCACATTTTTGAGAGATTGAGTTCAGATGTTGGAGAATTAAGCGAGGAAGACAAAAATTCCTTGTATGAGCAGAAAGCTTCGGCCTGGTATCAGGTGACATATCATCCTCATTGGGTCAGAAAGTCCCTTGATCTGAAAGATAAATCCCCAGAGAACCAAGAGGCTGATGGTTTGGGAAGCACGGTGATGTTGAGTTTCCCTTGGATTGCTGTTGATTACCTTGCTCGCACAAAGATAAGGGAACGGCATCGGAAATCTGGAAATTTTGATTCAACTAAGCCAGTTGATTCTCTGGCAAAGTATCTATCAGAAAGGTTATAG 3615 0.4124 MNLEASENDSVVTQISIGGFDSEVKASDLVNYLENKIGLVYRCRLKTSWTPPESYPEFNITDTAKITRTDDYMKVKPHAFVHFASSESVTAALNASGRCDMFLKNEPLKVSCGPENPYFLNQRRRTTTPFKMSDVIVEIGTLVSPGEFSVAWKGPDKGVKFLVDPFDGMCRFCFTRDTAFSFKGIDKKAVIKCDFQVGFLVRDINEMRRYNDTSYLVVLLHLASSPWVWYRTAEDDIEDLVPFDLLDDDDPWIRTTDFTPSGAIGRCNFYKISIPPRHGAKLMKAMLYLKGQRVQIHELPVKQTLRALNEPDFGRPMLDAFFYIDYQKGIAFDIMFLVNAVVHKGIFNQHRLSDRFFELLRNQSEELNVAALKHLCSYKRPVFDATKRLKVVQEWLLRNPKLYQISKQLDDIVEVRRLVITPSKAYCIPPEVELSNRVLRKFREVSDCFLRVTFMDEGMQTINVNALNYYVAPIVKEITSNSFPQKTKIYNRVKTILETGFSFCGRKYSFLAFSSNQLRDRSAWFFAEGKIRCDEIRSWMGRFNQKNVAKCAARMGQCFSSTYATVEVVANEVNFALPDVERNNYVFSDGIGMLSPDLAREVAEKLKLDNIPSAYQIRYAGFKGVVASWPSKGDGIRLSLRPSMNKFQSSHTILEICAWTRFQPGFLNRQIITLLSALGVPDDIFWQMQEAMLLKLNQMLVDADIAFDVLTKSCAEHGNAAAIMLSCGFSPQTEPHLRGMLTSTRAAQLWGLREKSRIFVSSGRWLMGVLDESGVLEQGQCFVQVSTPSLENCFSKHGSRFSETKNLQVVKGFVIIAKNPCLHPGDVRVLEAVDAPDLHHLCDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWVPMEYAAAESKLLTRQVMTRDIIEFFVRNMVNENLGAICNAHVVHADSSDYGALDEKCIHLAELAATAVDFPKTGKLVTMPYHLKPKLYPDFMGKENHQSYRSKKILGRLYRRIKDAYDEDIDAPYLNFVSGDIPYDKDLEVPGSADFIADSWEQKCAYDGQLSGLLGQYKVKREEEVVTGQIWSMPKYNSRKQGELKERLKHSYSALKKEFRHIFERLSSDVGELSEEDKNSLYEQKASAWYQVTYHPHWVRKSLDLKDKSPENQEADGLGSTVMLSFPWIAVDYLARTKIRERHRKSGNFDSTKPVDSLAKYLSERL* 1205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1201 1204 CDD RRM_SF 15 111 - -
Vra5g1201 1204 SUPERFAMILY RNA-binding domain, RBD 9 121 IPR035979 GO:0003676
Vra5g1201 1204 Pfam RNA dependent RNA polymerase 420 999 IPR007855 GO:0003968
Vra5g1201 1204 PANTHER RNA-DEPENDENT RNA POLYMERASE 6 7 1203 - -
Vra5g1201 1204 PANTHER RNA-DEPENDENT RNA POLYMERASE 7 1203 IPR007855 GO:0003968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1201 Vra-Chr5 18410550 18416514 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1201 K11699 - gmx:100795178 2271.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1201 5 18410550 18416514 Vra5g1201 5 18410550 18416514 ECH