Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1193 ATGGAAGCGAGTGCGGGAATGGTCGCTGGCTCGCACAAACGTAACGAGCTCGTTCGGATTCGCCACGATTCTTCTGACAGCGGGTCTAAACCCTTGAAGAGCTTGAATGGGCAAATCTGTCAAATATGCGGTGATACTGTTGGATTGACTGCGACTGGTGATGTGTTTGTTGCTTGCAACGAATGCGCCTTCCCCGTGTGTCGTCCTTGTTATGAATACGAGCGAAAGGATGGGAACCAGTCTTGTCCACAGTGCAAGACTAGATACAAGAGGCACAGAGGAAGTCCTCGAGTAGAGGGAGATGAAGATGAAGTGGACTCTGATGACATAGAGAATGAGTTCAATTATGCCCAGGGAAAGGCCAAGGCCAGGCGGCAGTGGGAGGAAGATGCTGACCTTTCATCGTCGTCTAGACGTGAATCTCAACAGCCAATTCCCCTCCTCACCAATGGCCAAACGATGTCTGGTGAGATTCCATGTGCCACTCCTGATACTCAATCTGTGCGAACTACTTCAGGTCCTTTGGGCCCATCTGAAAAGGTCCACTCACTCCCCTATATTGATCCAAGGCAACCAGTTCCTGTAAGAATTGTGGACCCATCAAAGGACTTAAATTCTTATGGTCTGGGAAATGTTGACTGGAAAGAAAGGGTTGAAGGTTGGAAGCTCAAGCAGGAGAAAAATATGGTACAAATGACCGGTAGATACGCCGAGGGGAAAGGAGGAGATGTTGAAGGGACTGGTTCTAATGGAGAAGAACTTCAAATGGTTGACGATGCTCGACAACCCATGAGTCGTGTGGTGCCAATTCCTTCATCTCAGCTGACACCTTATCGTGTTGTTATTGTACTCCGGTTGATTATTCTTGGCTTCTTCTTGCAATATCGTGTAACACACCCTGTGAAAGATGCATACCCACTGTGGCTGACATCAGTTATTTGTGAGATTTGGTTTGCCTTATCCTGGATACTGGATCAGTTTCCAAAATGGTCTCCAGTCAATCGTGAGACTTATCTTGAACGGCTTGCTTTAAGATATGATCGTGATGGAGAACCATCACAGCTAGATCCTGTTGATGTGTTTGTGAGTACAGTGGACCCCCTTAAAGAGCCACCTCTTGTAACTGCAAACACAGTGTTGTCTATACTTTCTGTTGATTACCCTGTGGACAAAGTTTCCTGCTACGTATCAGATGATGGTTCAGCTATGCTGACGTTTGAAGCACTATCAGAAACAGCTGAGTTTGCAAAGAAGTGGGTGCCCTTCTGCAAAAAGCACAATATTGAACCAAGAGCCCCGGAGTTTTATTTTGCACAGAAGATTGATTACTTGAAGGACAAGATTCAACCCTCATTTGTAAAGGAGCGACGATTAATGAAGAGAGAATATGAAGAATTCAAAGTACGGATCAATGCCCTTGTAGCCAAAGCTCAGAAGATGCCAGAGGAAGGTTGGACAATGCAGGATGGAACTCCTTGGCCTGGAAATAATCCTAGGGATCATCCTGGAATGATTCAGGTGTTCTTAGGTCACAGTGGAGGGCTGGATACAGATGGAAATGAGCTTCCTAGACTTGTTTATGTTTCTCGTGAGAAGCGACCAGGCTTCCAACATCACAAGAAGGCTGGAGCTATGAATGCATTGATTCGTGTATCTGCTGTCTTGACCAATGGTGCATATCTTCTGAATGTGGATTGTGATCACTATTTTAATAATAGCAAAGCTCTGAAAGAAGCCATGTGTTTCATGATGGATCCTGTTCTTGGAAAGAAGACATGCTATGTGCAATTTCCTCAGAGATTTGATGGCATTGACTTGCATGATAGATATGCCAATCGCAATATTGTGTTCTTTGATATCAACATGAAAGGTCAAGATGGTGTTCAGGGTCCAGTCTATGTGGGAACTGGTTGTTGTTTCAACAGGCAGGCTTTGTATGGTTATGATCCTGTTCTGACTGAGGAAGATTTGGAACCTAACATTATTGTAAAGAGTTGTTGGGGTTCTAGAAAGAAGGGAAAGGGTGGGAATAAGAAGTACATTGACAAGAAGAGGGCGATGAACAGAACAGAATCTACTGTTCCCATATTTAATATGGAAGACATAGAGGAGGGTGTTGAAGGTTATGATGATGAAAGGTCACTGCTTATGTCTCAAAAGAGTTTGGAGAAGCGTTTCGGTCAGTCTCCAGTTTTTATTGCTGCCACTTTCATGGAGCAGGGAGGCATTCCACCTTCAACAAACCCTGCAACTCTTCTTAAGGAAGCAATCCACGTTATCAGCTGTGGTTATGAAGACAAGACTGAATGGGGAAAAGAGATTGGATGGATCTATGGTTCGGTGACAGAAGATATCTTGACTGGGTTTAAGATGCATGCTCGTGGTTGGATTTCCATCTATTGCATGCCACCTCGCCCAGCATTTAAGGGTTCTGCTCCTATCAATCTTTCAGATCGTCTCAATCAGGTGCTTCGGTGGGCATTGGGTTCAATTGAGATTTTTCTTAGCAGGCATTGTCCCTTGTGGTATGGATACAATGGAAGGTTGAAGCCCCTGATGAGACTTGCTTATATTAACACTATTGTCTACCCCTTTACCTCAATCCCTTTGATTGCTTACTGTACGCTTCCTGCCTTTTGTCTCCTCACAAATAAATTTATTATTCCTGAGATAAGCAACTTTGCCAGCATGTGGTTCATTCTGCTCTTCGTCTCCATTTTTACTACTTCAATTCTTGAGCTTAGGTGGAGTGGGGTGAGCATAGAAGACTGGTGGAGAAATGAACAATTCTGGGTTATCGGTGGAACTTCTGCACATCTTTTTGCTGTGTTTCAGGGGCTTCTAAAAGTGCTTGCTGGGATCGATACAAATTTTACTGTTACATCAAAGGCATCGGACGAGGATGGGGATTTTGCAGAGCTTTATGTGTTTAAATGGACATCACTTCTCATCCCTCCTACGACGGTGCTTATTGTGAACTTGGTAGGGATTGTGGCTGGTGTGTCCTACGCCATAAACAGTGGTTACCAGTCTTGGGGTCCACTATTTGGGAAGCTGTTCTTTGCTATCTGGGTCATTGCCCATTTATACCCATTCTTGAAGGGTCTCTTGGGCAGGCAAAATCGTACCCCGACCATTGTTATTGTCTGGTCGGTTCTTCTTGCTTCAATATTCTCCTTGCTCTGGGTGAGGATTGATCCATTTACCTCAGGCTCCAACAGATTAACCAATGGTCAATGTGGCATCAACTGTTAG 3255 0.4455 MEASAGMVAGSHKRNELVRIRHDSSDSGSKPLKSLNGQICQICGDTVGLTATGDVFVACNECAFPVCRPCYEYERKDGNQSCPQCKTRYKRHRGSPRVEGDEDEVDSDDIENEFNYAQGKAKARRQWEEDADLSSSSRRESQQPIPLLTNGQTMSGEIPCATPDTQSVRTTSGPLGPSEKVHSLPYIDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQEKNMVQMTGRYAEGKGGDVEGTGSNGEELQMVDDARQPMSRVVPIPSSQLTPYRVVIVLRLIILGFFLQYRVTHPVKDAYPLWLTSVICEIWFALSWILDQFPKWSPVNRETYLERLALRYDRDGEPSQLDPVDVFVSTVDPLKEPPLVTANTVLSILSVDYPVDKVSCYVSDDGSAMLTFEALSETAEFAKKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRLMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPVLGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINMKGQDGVQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKSCWGSRKKGKGGNKKYIDKKRAMNRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEIFLSRHCPLWYGYNGRLKPLMRLAYINTIVYPFTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFVSIFTTSILELRWSGVSIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSYAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSVLLASIFSLLWVRIDPFTSGSNRLTNGQCGINC* 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1193 1084 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 21 1084 - -
Vra5g1193 1084 MobiDBLite consensus disorder prediction 1 30 - -
Vra5g1193 1084 SUPERFAMILY RING/U-box 25 112 - -
Vra5g1193 1084 Pfam Cellulose synthase 358 1072 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vra5g1193 1084 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 113 IPR013083 -
Vra5g1193 1084 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 516 658 IPR029044 -
Vra5g1193 1084 ProSiteProfiles Zinc finger RING-type profile. 40 86 IPR001841 -
Vra5g1193 1084 CDD mRING-HC-C4C4_CesA_plant 38 88 - -
Vra5g1193 1084 SUPERFAMILY Nucleotide-diphospho-sugar transferases 376 658 IPR029044 -
Vra5g1193 1084 Pfam Zinc-binding RING-finger 30 106 IPR027934 -
Vra5g1193 1084 MobiDBLite consensus disorder prediction 76 187 - -
Vra5g1193 1084 MobiDBLite consensus disorder prediction 137 177 - -
Vra5g1193 1084 PANTHER CELLULOSE SYNTHASE 21 1084 - -
Vra5g1193 1084 MobiDBLite consensus disorder prediction 122 136 - -
Vra5g1193 1084 MobiDBLite consensus disorder prediction 14 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1193 Vra-Chr5 18322825 18328987 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1193 1 1082 Glycosyltransferase AT4G32410 87.373 0.0 1930
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1193 K10999 - gmx:100798193 2194.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1193 5 18322825 18328987 Vra5g1193 5 18322825 18328987 ECH